View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_high_9 (Length: 548)
Name: NF14376_high_9
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 480; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 532
Target Start/End: Original strand, 37077922 - 37078453
Alignment:
| Q |
1 |
taattatgggtgcgtgcattttgaatcccaataaaccagttttaaccacacgatgaaattaccacgtttattttaaccgtggattgagttagtgacaaaa |
100 |
Q |
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| T |
37077922 |
taattatgggtgcgtgcattttgaatcccaataaaccagttttaaccacacgatgaaattaccacgtttattttaaccgtggattgagttagtgacaaaa |
37078021 |
T |
|
| Q |
101 |
cagacgcaaatggttacacnnnnnnnnnnnnnnnnccctccatcttttattcagtctctctcctctaatgcaaatggttacatacttatattcttgtgaa |
200 |
Q |
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| T |
37078022 |
cagacgcaaatggttacacttttttttccttttttccctccatcttttattcagtctctctcctctaatgcaaatggttacatacttatattcttgtgaa |
37078121 |
T |
|
| Q |
201 |
ttcgataactaacgacgttgacgaattttcctttacgttctccgcttacaaaaatggtaataaagatgattttctctttctgtatttcatttttatgctt |
300 |
Q |
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| T |
37078122 |
ttcgataactaacgacgttgacgaattttcctttacgttctccgcttacaaaaatggtaataaagatgattttctctttctgtatttcatttttatgctt |
37078221 |
T |
|
| Q |
301 |
tctctttgtttaacccttactttaatgtataatccatcataatctggaaaatgaagctaataaattaaaacatttcttgaactatataggttttagtatt |
400 |
Q |
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| T |
37078222 |
tctctttgtttaacccttactttaatgtataatccatcataatctgaaaaatgaagctaataaattaaaacatttcttgaactatataggttttagtatt |
37078321 |
T |
|
| Q |
401 |
attaatttcgtccttttaaattagtattttaaccttatatttgcgatcaatttcttatgaaattcattgctaattgtataactaggggccagtcatgatt |
500 |
Q |
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| T |
37078322 |
attaatttcgtccttttaaattagtattttaaccttatatttgcgatcaatttcttatgaaattcattgctaattgtataactaggggccagtcatgatt |
37078421 |
T |
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| Q |
501 |
gactcaaataagtctcatggcgggcgtttact |
532 |
Q |
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| T |
37078422 |
gactcaaataagtctcatggcgggcgtttact |
37078453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 385 - 489
Target Start/End: Original strand, 37063660 - 37063772
Alignment:
| Q |
385 |
tataggttttagtattattaatttcgtccttttaaattagtattttaaccttatatttgcgatcaat--------ttcttatgaaattcattgctaattg |
476 |
Q |
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|||| ||||| |||||||||||||| || ||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||| |
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| T |
37063660 |
tatatgttttggtattattaatttcatctgtttaaattagtattttaaccttataattatgatcaataagtgctaggcttatgaaattcattgctaattg |
37063759 |
T |
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| Q |
477 |
tataactaggggc |
489 |
Q |
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| T |
37063760 |
tataactatgggc |
37063772 |
T |
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