View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14376_low_1 (Length: 1131)
Name: NF14376_low_1
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_low_1 |
 | |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 651; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 282 - 1128
Target Start/End: Complemental strand, 17156668 - 17155842
Alignment:
| Q |
282 |
ttatcattcatataaccatcaaagtaaaagagaaccaaaaagcaaaatagaaagcaatacaattcaaatcctctttttcttgggtttttcccatattcaa |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
17156668 |
ttatcattcatataaccatcaaagtaaaagagaaccaaaaagcaaaaaagaaagcaatacaattcaaatcctctttttcttgggttttccccatattcaa |
17156569 |
T |
|
| Q |
382 |
atgtgaatcatatacctaacgttttaaagttgatggttttaaagttgatggagatatgaagtgtctccctttcttgtggtccgggagcatttgttcatcg |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||| |||||||| |
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| T |
17156568 |
atgtgaatcatatacctaacgttttaaagttgatgg---------------agatatgtaatgtctccctttcttgtggtccgggagcattggttcatcg |
17156484 |
T |
|
| Q |
482 |
ttgctttcgatgctccccgatttctccaacaattgttataaaaacctcgattcaacatggtgttggattatggtgtttggatcaagtagaggacgtgtag |
581 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
17156483 |
ttgctttcgatgctccccgatatctccaacaattgttataagagcctcgattcaacatggtgttggattatggtgtttggatcaagtataggacgtgtgg |
17156384 |
T |
|
| Q |
582 |
gacttacacttgagggagatattattgtggtggctagtcctacatttattattatgaatgggaaaaatattgagtatacaggagatataattcatatacc |
681 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17156383 |
aatttacactcgagggagatattattgtggtggctagtcctacatttattattatgaatgggaaaaatattgagtatacaggagatataattcatatacc |
17156284 |
T |
|
| Q |
682 |
taatgttttaagattttggttgcagatgtcttaaattataaatgttaagaactttgactccttaaattacaaacatcgtacatttttgtctcttaaatta |
781 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17156283 |
taatgttttaagattttagttgtagatgtcttaaattataaatgttaagaactttgactccttaaattacaaacatcgtacatttttgtctcttaaatta |
17156184 |
T |
|
| Q |
782 |
caacaacaataatttgacaataataagaagaattaaagtgtcaaacctttgtttattcagcaaagaacatgactggatcctctccggtgacaggagaggt |
881 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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|
| T |
17156183 |
caacaac---aatttgacaataataagaagaattaaagtgtcaaacctttgtttattcagcaaagaacgggactggatcctctctagtgacaggagaggt |
17156087 |
T |
|
| Q |
882 |
ccagtgaaatcttgaccatttaaattaaaagtgttattaataaacatatgagagataaagcattaaagggtgtagattttcacatgagaaaactacagag |
981 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17156086 |
ccagtgaaatcttggccatttaaattaaaagtgttattaataaacatatgagagataaaacattaaagggtgtagattttcacatgagaaaactacagag |
17155987 |
T |
|
| Q |
982 |
aaatttactagagggaatcctctcccgcaaagaacttccaaaaatataagaaaataattagtgagttgctattgatttctaatttggaatttaagatttc |
1081 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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|
| T |
17155986 |
-aatttatcggagggaatcctctcccgcaaaaaacttccaaaaatataagaaaataattagtgagttgctattgatttctcatttggattttaagatttc |
17155888 |
T |
|
| Q |
1082 |
gataggtgtaaatttaaaatgactattgctttttacactctattcat |
1128 |
Q |
| |
|
||| ||| |||||||||||| |||||||||||||||||||||||||| |
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|
| T |
17155887 |
gattggtataaatttaaaat-actattgctttttacactctattcat |
17155842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 17156995 - 17156706
Alignment:
| Q |
1 |
gaagaatgttaggaacttatgaaccttgtccaaaaacaatcaaagcaatatttaaattgtataatgctcgattagtttagtattctctgagcttgtataa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||| |||||||| |
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|
| T |
17156995 |
gaagaatgttaggaacttatgaaccttgtccaaaaacaatcaaagcaatatttaaattgtataatgctcgattagtttactattttatgagtttgtataa |
17156896 |
T |
|
| Q |
101 |
acacttataaatctttgtatttccctctagtttgaggttaagaagtcctctagtttgaggc-aaagaaaatataggattatgtgtcttagtggagtct-- |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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|
| T |
17156895 |
acacttataaatctttgtatttccctctagtttgaggttaagaagtcctctagtttgaggcaaaagaaaatataggattatttgtcttagtggagtctgt |
17156796 |
T |
|
| Q |
198 |
-----ggaagattatatttaaaaatctcttaagtgtgaggggattgaagtacctgcgaattatggagtgaaccttaacaactacctgtat |
282 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
17156795 |
aatcaggaagattatatttaaaaatctgttaagtgtgaggggattggagtacctccgaattatggagtgaaccttaacaactacctgtat |
17156706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 5e-53
Query Start/End: Original strand, 855 - 1001
Target Start/End: Complemental strand, 8814211 - 8814065
Alignment:
| Q |
855 |
tggatcctctccggtgacaggagaggtccagtgaaatcttgaccatttaaattaaaagtgttattaataaacatatgagagataaagcattaaagggtgt |
954 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||| ||||||||| ||| |
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|
| T |
8814211 |
tggatcctctccagtgacaggagaggtctagtgaaatcttggccatttaaaataaaaaggttattaataaacatatgagagataaaccattaaaggatgt |
8814112 |
T |
|
| Q |
955 |
agattttcacatgagaaaactacagagaaatttactagagggaatcc |
1001 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8814111 |
agattttcacatgagaaaactgtagagaaatttactagagggaatcc |
8814065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 163
Target Start/End: Complemental strand, 13846503 - 13846464
Alignment:
| Q |
124 |
cctctagtttgaggttaagaagtcctctagtttgaggcaa |
163 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
13846503 |
cctctagtttgaggttaggaaatcctctagtttgaggcaa |
13846464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 4e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 855 - 1007
Target Start/End: Original strand, 13393402 - 13393554
Alignment:
| Q |
855 |
tggatcctctccggtgacaggagaggtccagtgaaatcttgaccatttaaattaaaagtgttattaataaacatatgagagataaagcattaaagggtgt |
954 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||||||| ||| |
|
|
| T |
13393402 |
tggatcctctccagtgacacgagaggtccagtgaaatcttggtcatttaaattaaaaggattattaataaatatatgagagataaaacattaaaggatgt |
13393501 |
T |
|
| Q |
955 |
agattttcacatgagaaaactacagagaaatttactagagggaatcctctccc |
1007 |
Q |
| |
|
||||||||||||||||| ||| ||| |||||||| | |||||||||||||||| |
|
|
| T |
13393502 |
agattttcacatgagaatactgcagggaaatttattggagggaatcctctccc |
13393554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 85; Significance: 6e-40; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 852 - 1002
Target Start/End: Original strand, 12773 - 12920
Alignment:
| Q |
852 |
gactggatcctctccggtgacaggagaggtccagtgaaatcttgaccatttaaattaaaagtgttattaataaacatatgagagataaagcattaaaggg |
951 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||| ||||||||| |||||| ||||| |||||||||||| ||| ||| |||||||||| |
|
|
| T |
12773 |
gactggatcctctccaatgacaggagaggtccactgaaatcttggccatttaaaataaaaggtttattgataaacatatgatagagaaaacattaaaggg |
12872 |
T |
|
| Q |
952 |
tgtagattttcacatgagaaaactacagagaaatttactagagggaatcct |
1002 |
Q |
| |
|
|||||||||||||||||||||| | | |||||||||||||||||||||| |
|
|
| T |
12873 |
tgtagattttcacatgagaaaatt---gggaaatttactagagggaatcct |
12920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 5e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 852 - 939
Target Start/End: Original strand, 37032693 - 37032780
Alignment:
| Q |
852 |
gactggatcctctccggtgacaggagaggtccagtgaaatcttgaccatttaaattaaaagtgttattaataaacatatgagagataa |
939 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
37032693 |
gactggatccgctcgagtgacaggagaggtccaatgaaattttgaccatttaaattaaaagggttattaataaacatacgagagataa |
37032780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 854 - 975
Target Start/End: Complemental strand, 34881990 - 34881871
Alignment:
| Q |
854 |
ctggatcctctccggtgacaggagaggtccagtgaaatcttgaccatttaaattaaaagtgttattaataaacatatgagagataaagcattaaagggtg |
953 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||| ||| ||||||||| |||||| ||||| ||||| ||||||||| ||| |||||||| | |
|
|
| T |
34881990 |
ctggatcctctccggtgatagaagaggtccagtgaaattttggccatttaaaataaaagatttattgataaatatatgagag--aaaacattaaagacgg |
34881893 |
T |
|
| Q |
954 |
tagattttcacatgagaaaact |
975 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
34881892 |
tagattttcacatgagaaaact |
34881871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 886 - 1007
Target Start/End: Original strand, 21430034 - 21430156
Alignment:
| Q |
886 |
tgaaatcttgaccatttaaatt-aaaagtgttattaataaacatatgagagataaagcattaaagggtgtagattttcacatgagaaaactacagagaaa |
984 |
Q |
| |
|
|||||||||| | |||||||| ||||| ||||||||||| |||| ||||||||| |||||| ||||||||||||||||||||||||||| | ||||| |
|
|
| T |
21430034 |
tgaaatcttggtcttttaaattcaaaagggttattaataagtatataagagataaaatattaaaaggtgtagattttcacatgagaaaactagaaagaaa |
21430133 |
T |
|
| Q |
985 |
tttactagagggaatcctctccc |
1007 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
21430134 |
tttacaggagggaatcctctccc |
21430156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 35914442 - 35914502
Alignment:
| Q |
115 |
ttgtatttccctctagtttgaggttaagaagtcctctagtttgaggcaaagaaaatatagga |
176 |
Q |
| |
|
|||||||||| ||||||||||||||| |||| ||||| |||||||||||| |||| ||||| |
|
|
| T |
35914442 |
ttgtatttcc-tctagtttgaggttagaaagtactctattttgaggcaaaggaaatctagga |
35914502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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