View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_low_11 (Length: 535)
Name: NF14376_low_11
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Complemental strand, 39444952 - 39444454
Alignment:
| Q |
1 |
tagaaagagcctttccttttaggaagaataccagatctaaagtaatgagagagagaaaaacctgaacatccgatcctgaattgtgcatcaaatcaaaaga |
100 |
Q |
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| T |
39444952 |
tagaaagagcctttccttttaggaagaagaccagatctaaagtaatgagagaga-aaaaacctgaacatccgatcctgaattgtgcatcaaatcaaaaga |
39444854 |
T |
|
| Q |
101 |
ttatatatgagcaagtttcaagatacaaaattcaatatactattggtaggaggactttcaagatgcatgaacagttgtgcgagtttataattaataacta |
200 |
Q |
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| T |
39444853 |
ttatatatgagcaagtttcaagatgcaaaattcaatatactattggtaggaggactttcaagatgcatcaacagttgtgcgagttta----taataactc |
39444758 |
T |
|
| Q |
201 |
gttttcctcataatcttctcttaagatatgcttctttgtgccgcgaattgtgtgctcccttgtgtgctgagtttaaaagaaaattcccacgtagatcaga |
300 |
Q |
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| T |
39444757 |
gttttcctcataatcttctc-taagctatgcttctttgtgctgcgaattgtgtgc----------gctgagtttaaaagaaaaatcccacgtaaatcaga |
39444669 |
T |
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| Q |
301 |
ggttt-aatagtaaacatagcagctaatttgaaaaaggnnnnnnnnnttgtcttctccagtttgaatttgcactatgcaaagtataatggaaatgtgttt |
399 |
Q |
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| T |
39444668 |
agtttaaatagtaaacatagcagctaatttgaaaaaggaaaaaataattgtcttctctagtttgaatttgcactatgcaaagtataatggaaatgtg--- |
39444572 |
T |
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| Q |
400 |
ataagtggaagacatcattgcttgttaaaatatacaacttgctaaatccattttaagagtggactaaataaaaatatccctagaattgctcatacagcaa |
499 |
Q |
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| T |
39444571 |
--aagtggaagacatcatcgcttgttaaaatatacaacttgctaaatccattttaagagtggactaaataaaaatattcctagaattgctcatacagcaa |
39444474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 145 - 337
Target Start/End: Complemental strand, 39467362 - 39467186
Alignment:
| Q |
145 |
ggtaggaggactttcaagatgcatgaacagttgtgcgagtttataattaataactagttttcctcataatcttctcttaagatatgcttctttgtgccgc |
244 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
39467362 |
ggtaggaggactttcaagattcatgaacagttgtgcgagttta----taataacttgttttcctcataatcttctc-taagttatgcttctttgtgccgc |
39467268 |
T |
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| Q |
245 |
gaattgtgtgctcccttgtgtgctgagtttaaaagaaaattcccacgtagatcagaggttt-aatagtaaacatagcagctaatttgaaaaagg |
337 |
Q |
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| T |
39467267 |
gaa------------ttgtgtgctgagtttaaaagaaaattcccacgtaaatcagaagtttaaatagtaaacatagcagctaatttgaaaaagg |
39467186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 348 - 446
Target Start/End: Complemental strand, 39467023 - 39466927
Alignment:
| Q |
348 |
tgtcttctccagtttgaatttgcactatgcaaagtataatggaaatgtgtttataagtggaagacatcattgcttgttaaaatatacaacttgctaaat |
446 |
Q |
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| T |
39467023 |
tgtcttctctagttttagtttgcactatacaaagtataatggaaatgtgtttata--tgtaagacatcatcgcttgttaaaatatacaacttgctaaat |
39466927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 463 - 519
Target Start/End: Complemental strand, 39466932 - 39466876
Alignment:
| Q |
463 |
ctaaataaaaatatccctagaattgctcatacagcaaagataagagaagattcactt |
519 |
Q |
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| T |
39466932 |
ctaaataaaaatatccctggaattgctcatacagcaaagataagagaagattcactt |
39466876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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