View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_low_13 (Length: 530)
Name: NF14376_low_13
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 278 - 516
Target Start/End: Original strand, 52878733 - 52878974
Alignment:
| Q |
278 |
cacatccattgcttccattttttagttatttggtctcggtctacttccccttctatttgcttgtattctcggatctctaacacaattttcttcctcgtta |
377 |
Q |
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| T |
52878733 |
cacatccattgcttccattttttagttatttggtctcggtctacttccccttctatttgcttgtattctcggatctctaacacaattttcttcctcgtta |
52878832 |
T |
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| Q |
378 |
caattttttagttatttagttatttgtttgtgatcaacatggatcacatatattt---aacaagttggaaagatatttaattatttttgaacttgctagc |
474 |
Q |
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| T |
52878833 |
caattttttagttatttagttatttgtttgtgatcaacatggatcacatatatttaacaacaagttggaaatatatttaattatttttgaacttgctagc |
52878932 |
T |
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| Q |
475 |
ttgttgtcgtttggattgatattcttgcatgagcatgatgat |
516 |
Q |
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| T |
52878933 |
ttgttgtcgtttggattgatattcttgcataagcatgatgat |
52878974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 52878974 - 52878733
Alignment:
| Q |
15 |
atcatcatgctcatgcaagaatatcaatccaaacgacaacaagctagcaagttcaaaaataattaaatatctttccaacttgtt---aaatatatgtgat |
111 |
Q |
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| T |
52878974 |
atcatcatgcttatgcaagaatatcaatccaaacgacaacaagctagcaagttcaaaaataattaaatatatttccaacttgttgttaaatatatgtgat |
52878875 |
T |
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| Q |
112 |
ccatgttgatcacaaacaaataactaaataactaaaaaattgtaacgaggaagaaaattgtgttagagatccgagaatacaagcaaatagaaggggaagt |
211 |
Q |
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| T |
52878874 |
ccatgttgatcacaaacaaataactaaataactaaaaaattgtaacgaggaagaaaattgtgttagagatccgagaatacaagcaaatagaaggggaagt |
52878775 |
T |
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| Q |
212 |
agaccgagaccaaataactaaaaaatggaagcaatggatgtg |
253 |
Q |
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| T |
52878774 |
agaccgagaccaaataactaaaaaatggaagcaatggatgtg |
52878733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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