View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14376_low_15 (Length: 515)
Name: NF14376_low_15
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 196 - 500
Target Start/End: Complemental strand, 10178811 - 10178508
Alignment:
| Q |
196 |
aataaaaaggtcgcggacttcatccacctgctcctcatccacatatgcagtgatcattgcagaccatgcagcaatgtctttataaggcaagatatgaaaa |
295 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10178811 |
aataaaaaggtcgcgaactttatccacctgctcctcatccacatatgcagtgatcattgcagaccatgcagcaatgtctttataaggcaagatatgaaaa |
10178712 |
T |
|
| Q |
296 |
tacttttttgctaactcaatcatcttgttttgcgccaaacccgaaaccatgcattccatgaaacatgatgcttctccgcctctggcatcgactcaaacta |
395 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10178711 |
tacttttttgctaactcaatcattttgttttgcgccaaacccgaaaccatgcattccatgaaacatgatgcttctccgcctctggcatcgactcaaacta |
10178612 |
T |
|
| Q |
396 |
ctgtatagcttcattaaaagaaaagtacatatattcactttggatttggtcacattattaaaagaaaagtgctttatagtagtaattggttttgagggtc |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10178611 |
ctgtatagcttcattaaaagaaaagtacatatattcac-ttggatttggtcacattattaaaagaaaagggctttatagtagtaattggttttgagggtc |
10178513 |
T |
|
| Q |
496 |
caaat |
500 |
Q |
| |
|
||||| |
|
|
| T |
10178512 |
caaat |
10178508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 10181676 - 10181497
Alignment:
| Q |
17 |
atattgtgaatgttagaggagatacacttgataggccaattttcattgttcaaacacatatgatttcggtggcactaagcccaccaaaaagtatcagcaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10181676 |
atattgtgaatgttagaggagatacacttgataggccaattt-cattgttcaaacacataagatttcggtggcactaagcccaccaaaaagtatcagcaa |
10181578 |
T |
|
| Q |
117 |
aaatggtagaataggatcctgtggtgccaatcttgagccaatcatgctcgttcagggtgattgaaacctacatgattccaa |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10181577 |
aaatggtagaataggatcctgtggtgccaatcttgagccaatgatgctcgttcagggtgattgaaacctacatgattccaa |
10181497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 25 - 170
Target Start/End: Complemental strand, 51827763 - 51827618
Alignment:
| Q |
25 |
aatgttagaggagatacacttgataggccaattttcattgttcaaacacatatgatttcggtggcactaagcccaccaaaaagtatcagcaaaaatggta |
124 |
Q |
| |
|
|||||| ||||| |||| ||||| | |||||||| |||||||||||||||| |||||||||||||| || ||||||||| |||| ||||||| |||| | |
|
|
| T |
51827763 |
aatgttggaggaaatacggttgatggaccaatttttattgttcaaacacataagatttcggtggcaccaaacccaccaaatagtagcagcaaagatggaa |
51827664 |
T |
|
| Q |
125 |
gaataggatcctgtggtgccaatcttgagccaatcatgctcgttca |
170 |
Q |
| |
|
||||| || || ||||||||| ||||||||| ||||||||||||| |
|
|
| T |
51827663 |
gaatatgaaccaatggtgccaaccttgagccagtcatgctcgttca |
51827618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University