View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_low_17 (Length: 487)
Name: NF14376_low_17
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 372
Target Start/End: Complemental strand, 27011872 - 27011513
Alignment:
| Q |
17 |
agttacttacttgtcaagagattggatgtgagagtgcaatgaaggagtgaaggatggtgatgatggttgagaagagagagttccatgatattggtctgtt |
116 |
Q |
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| T |
27011872 |
agttacttacttgtcaagagattggatgtgagagtgcaatgaagaagtgaaggatggtgatgatggttgagaagagagagttccatgatattggtttgtt |
27011773 |
T |
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| Q |
117 |
ctttgttaattaataatctagagtttataattagctttttatacatatttatttttctttactttggtttgagaggaaagagaatatagagagagaggat |
216 |
Q |
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| T |
27011772 |
ctttgttaattaataatctagagtttataattagcttttcatacatatttatttttctttactttggtttgagaggaaagagaatatagagagagaggat |
27011673 |
T |
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| Q |
217 |
aacgtagttgattctatccacaannnnnnnnnnnngaagcatttaagaaatcatagaacttt----actctaggactttaagttttagatttgctacgac |
312 |
Q |
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| T |
27011672 |
aacgtagttgattctatccacaatttttattttttgaagcatttaagaaatcatagaactttactcactccaggactttaagttttgggttggatatgtc |
27011573 |
T |
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| Q |
313 |
acgaacaaactcatcactattctgtctcataatcttaataggttctgcattttcaaataa |
372 |
Q |
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| T |
27011572 |
acgaacaaaaccatcaatattatgttttataatcttaataggttctgtattttaaaataa |
27011513 |
T |
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