View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_low_18 (Length: 472)
Name: NF14376_low_18
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 13 - 453
Target Start/End: Complemental strand, 27312536 - 27312096
Alignment:
| Q |
13 |
aatatgttctacttcttcatcatttgaaatttgtatactcaattcttgacgattatcttctccttctggtatctgattcgatatcattgtaggctcggtg |
112 |
Q |
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| T |
27312536 |
aatatgttctacttcttcatcatttgaaatttgtatactcaattcttgacgattatcttctccttctggtatctgattcgatatcattgtaggctcggtg |
27312437 |
T |
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| Q |
113 |
gtgtcaatatcgggtcttggagcaaggttagcacgacaaactgggcaagtatcatgagagacaagccaaatatcgatgcaaccatggtggtacacatggt |
212 |
Q |
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| T |
27312436 |
gtgtcaatatcgggtcttggagcaaggttagcacgacaaactgggcaagtatcatgagagacaagccaaatatcgatgcaaccatggtggtacacatggt |
27312337 |
T |
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| Q |
213 |
tacatttagggattaaacgcaatgtttcatcgtcttgaaactcattcaaacaaacagcacaagccaatgtgcttttcccgatcttgagtcccttgacatt |
312 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27312336 |
tacatttaggaattaaacgcaatgtttcatcgtcttgaaactcattcaaacaaacagcacaagccaatgtgcttttcccgatcttgagtcccttgacatt |
27312237 |
T |
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| Q |
313 |
ggagtaacgaaaagttgggaatgtgtctataacttcttggttaagaccattacttggctcgttattttgtgaccggagaccatttgctccgttaggtaaa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27312236 |
ggagtaacgaaaagttgggaatgtgtctataacttcttggttaagaccgttacttggctcgttgttttgtgaccggagaccatttgctccgttaggtaaa |
27312137 |
T |
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| Q |
413 |
gtcaggtcaaaaataactccttgttgatgatcggtgcattt |
453 |
Q |
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| T |
27312136 |
gtcaggtcaaaaataactccttgttgatgatcggtgcattt |
27312096 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 32965336 - 32965372
Alignment:
| Q |
237 |
tttcatcgtcttgaaactcattcaaacaaacagcaca |
273 |
Q |
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||||||| | ||||||||||||||||||||||||||| |
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| T |
32965336 |
tttcatcttgttgaaactcattcaaacaaacagcaca |
32965372 |
T |
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