View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14376_low_19 (Length: 451)
Name: NF14376_low_19
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_low_19 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 16 - 445
Target Start/End: Complemental strand, 356986 - 356552
Alignment:
| Q |
16 |
aggaagacattccctagataactaatgttccaaaacttttggtttggaaataccctctttggaacgggtgttgatgccctctgaatccgcaggattagct |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
356986 |
aggaagacattccctagataactaatgttccaaaacttttggtttggaaataccctctttggaacgggtgttgatgccctctgaatccgcatgattagct |
356887 |
T |
|
| Q |
116 |
tgtgtgatatgttttttctgctttttggtgaccaaaacagtgttgggagtttcctatgtttgaatattattttggtctcccaccctctactacatctccc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
356886 |
tgtgtgatatgttttttctgctttttggtgaccaaaacagtgttgggagtttcctgtgtttaaatattattttggtctccctccctctactaaatctccc |
356787 |
T |
|
| Q |
216 |
cataaagcctttaaaatgttctcactcttctgaaaggctacattaggtttgaaagataaagcaacatgggaggaactcacaagccttttatcagaggtca |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
356786 |
cataaagcctttaaaatgttctcactcttctgaaaggcttcattaggtttgaaagataaagcaacgtgggaggaactcacaagccttttattagaggtca |
356687 |
T |
|
| Q |
316 |
atgacatggcagtgcaggcaataggtgcctccattgatacaacattgctggctggtaaagacatcctccttgaaacaccaatctggaaagccct-----g |
410 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
356686 |
atgacatggcagtgcaggcaatagttgcctccattgatacaacattgctggctggtaaagacatcctccttgaaacaccaatctgcaaagccctggtggg |
356587 |
T |
|
| Q |
411 |
gtgtctctaaggacactattttcctgattcaactc |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
356586 |
gtgtctctaaggacactattttcctgattcaactc |
356552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 445
Target Start/End: Complemental strand, 10583012 - 10582579
Alignment:
| Q |
16 |
aggaagacattccctagataactaatgttccaaaacttttggtttggaaataccctctttggaacgggtgttgatgccctctgaatccgcaggattagct |
115 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10583012 |
aggaagacattccctagacaactaaggttccaaaacttttggtttggaaatacccattttggaacgggtgatgatgccctctgaatccgcaggattagct |
10582913 |
T |
|
| Q |
116 |
tgtgtgatatgttttttctgctttttggtgaccaaaacagtgttgggagtttcctatgtttgaatattattttggtctcccaccctctactacatctccc |
215 |
Q |
| |
|
|||||||| || |||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
10582912 |
tgtgtgatgtgattttactgctttttggtgaccaaaacagtgttaggagtttcctgtgtttgaatattattttggtctccctccctctactaaatctccc |
10582813 |
T |
|
| Q |
216 |
cataaagcctttaaaatgttctcactcttctgaaaggctacattaggtttgaaagataaagcaacatgggaggaactcacaagccttttatcagaggtca |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||| ||| |||||||||||||||||| |
|
|
| T |
10582812 |
cataaagcctttaaaatgttctcactcttctgaaaggcttcattaggcgtgaaagataaagcaacatgggaagaacttacaggccttttatcagaggtca |
10582713 |
T |
|
| Q |
316 |
atgacatggcagtgcaggcaataggtgcctccattgatacaacattgctgg----ctggtaaagacatcctccttgaaacaccaatctggaaagccctgg |
411 |
Q |
| |
|
|||||||||||||||||| |||||||||| || ||||||||| |||||||| |||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
10582712 |
atgacatggcagtgcaggaaataggtgccgccgttgatacaatattgctggctggctggtaaagacatcctccctgaaacaccaatctgcaaagccctgg |
10582613 |
T |
|
| Q |
412 |
tgtctctaaggacactattttcctgattcaactc |
445 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| |
|
|
| T |
10582612 |
tgtctctaatgacactattttcctgatacaactc |
10582579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 38984582 - 38984442
Alignment:
| Q |
18 |
gaagacattccctagataactaatgttccaaaacttttggtttggaaataccctctttggaacgggtgttgatgccctctgaatccgcaggattagcttg |
117 |
Q |
| |
|
||||||||||||| || |||||| | || |||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38984582 |
gaagacattccct-gacaactaagggtctaaaacttttggttttgaaataccctttttggaacgggtgatgatgccctctgaatccgcaggattagcttg |
38984484 |
T |
|
| Q |
118 |
tgtgatatgttttttctgctttttggtgaccaaaacagtgtt |
159 |
Q |
| |
|
||||||||||||| | || | ||| | |||||| |||||||| |
|
|
| T |
38984483 |
tgtgatatgttttctatgttgtttagagaccaagacagtgtt |
38984442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 35 - 165
Target Start/End: Complemental strand, 16465598 - 16465468
Alignment:
| Q |
35 |
aactaatgttccaaaacttttggtttggaaataccctctttggaacgggtgttgatgccctctgaatccgcaggattagcttgtgtgatatgttttttct |
134 |
Q |
| |
|
|||||| |||| |||||||||||||| |||||||||| ||||||||| ||| ||||||||||||||||||| |||| ||||||||||||||| |||||| |
|
|
| T |
16465598 |
aactaaggttctaaaacttttggttttgaaataccctttttggaacgagtgatgatgccctctgaatccgcctgattcgcttgtgtgatatgtcttttct |
16465499 |
T |
|
| Q |
135 |
gctttttggtgaccaaaacagtgttgggagt |
165 |
Q |
| |
|
||| ||||| |||||| | |||||| ||||| |
|
|
| T |
16465498 |
gctgtttggagaccaagatagtgtttggagt |
16465468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 50249159 - 50249261
Alignment:
| Q |
18 |
gaagacattccctagataactaatgttccaaaacttttggtttggaaataccctctttggaacgggtgttgatgccctctgaatccgcaggattagcttg |
117 |
Q |
| |
|
|||||||||||||||| |||||| |||| |||||||||||||| |||||||||| ||||||||||||| ||||||||| |||||||||| ||||| |||| |
|
|
| T |
50249159 |
gaagacattccctagacaactaaggttctaaaacttttggttttgaaataccctttttggaacgggtgatgatgccctttgaatccgcatgattaacttg |
50249258 |
T |
|
| Q |
118 |
tgt |
120 |
Q |
| |
|
||| |
|
|
| T |
50249259 |
tgt |
50249261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 1265402 - 1265464
Alignment:
| Q |
42 |
gttccaaaacttttggtttggaaataccctctttggaacgggtgttgatgccctctgaatccg |
104 |
Q |
| |
|
|||| |||||||||||||| | ||| || | ||| ||||||||| |||||||||||||||||| |
|
|
| T |
1265402 |
gttctaaaacttttggttttgtaatgccgtttttagaacgggtgatgatgccctctgaatccg |
1265464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University