View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_low_2 (Length: 1068)
Name: NF14376_low_2
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 903; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 903; E-Value: 0
Query Start/End: Original strand, 1 - 1048
Target Start/End: Original strand, 23408236 - 23409287
Alignment:
| Q |
1 |
agtggtggtccgcagaaagcattagaaattgagacacccgaaattaagttgagcgagttaaagcggttaacagataactttggtacaaaagcacttattg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23408236 |
agtggtggtccgcagaaagcattagaaattgagacacccgaaattaagttgagcgagttaaagcggttaacagataactttggtacaaaagcacttattg |
23408335 |
T |
|
| Q |
101 |
gagaaggttccaatgggagggttttccacgcaaagttgagtactggggaggaggctgcaattaagaagctggataccggttcttcactggatcctgactc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
23408336 |
gagaaggttccaatgggagggttttccacgcaaagttgagtactggggaggaggctgcaattaagaagctggataccggttcttcaccggatcctgactc |
23408435 |
T |
|
| Q |
201 |
cgattccgattttgaagcacaggtagnnnnnnnn----attgataatgctttgaggaaatatattggctggttggattgtcacaatctgaatcatatgtc |
296 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23408436 |
cgattccgattttgaagcacaggtagttttttttttttattgataattctttgaggaaatatattggctggttggattgtcacgatctgaatcatatgtc |
23408535 |
T |
|
| Q |
297 |
attatggaaccatcatacagttagcaattgtttcaagactgaagaatgaacacgttgtggggttgatgggatattctcttgaggcaaataacagaatttt |
396 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23408536 |
attacggaaccatcatacagttagcaattgtttcaagactgaagaatgaacactttgtggggttgatgggatattctcttgaggcaaataacagaatttt |
23408635 |
T |
|
| Q |
397 |
ggtttatcaatatgcaagtcttggtgcgttgcatgacacattgcacggtaagcctaacgatataactaatttctatatattaaggaaatagttcacgtgc |
496 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
23408636 |
ggtttaccaatatgcaagtcttggttcgttgcacgacacattgcacggtaagcataacgatataactaatttctatatattaaggaaatagttcacatgc |
23408735 |
T |
|
| Q |
497 |
gttattatgttgaacactactaagcttttgatgttgcaggaagaaaaggagttcaaggggctgaacctggtataattttgagttggaaccaaagagtaaa |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23408736 |
gttattatgttgaacactactaagcttttgatgttgcaggaagaaaaggagttcagggggctgaacctggtataattttgagttggaaccaaagagtaaa |
23408835 |
T |
|
| Q |
597 |
agttgcatttggtgcagcaaaaggacttgagtttcttcatgagaaagttcaaccttcaatagttcatagagatgttagatccaccaatgttttgctgttt |
696 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23408836 |
agttgcatttggtgcagcaaaaggacttgagtttcttcatgagaaagttcaaccttcaatagttcatagagatgttagatccaccaatgttttgctgttc |
23408935 |
T |
|
| Q |
697 |
aatgattatgaggctaagattgcagatttcaacttgacaaatcagtcttctgactcggcagctcgactacattcaacaagagtcttgggaacatttggct |
796 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23408936 |
aatgattatgaggctaagattgcagatttcaacttgacaaatcagtcttctgactcggcagctcgactacattcaacaagagtcttgggaacatttggct |
23409035 |
T |
|
| Q |
797 |
atcatgctccagagtatatatgcttgaactctacctcactcttagtttgatgaaacctagttatgcttaggatttggattgcctttgtctgaaaaatgtc |
896 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| |
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|
| T |
23409036 |
atcatgctccagagtatatatgcttgaactctacctcactcttagtttgatgaaacctagttatgcttaggatttcgattgcctttgtcagaaaaacgtc |
23409135 |
T |
|
| Q |
897 |
gaaacggatgcgaccatgcaatctcggccatccaattaagatcagacaactcacatttcaacttttgtaatcaactttgaagtttaatttcaaaatgtaa |
996 |
Q |
| |
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||| |||||| ||||||||||| |||||||||||| ||||||||||||||||||||||| || | |||||||||||||||||||||||||||||| || |
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|
| T |
23409136 |
gaagtggatgcagccatgcaatcttggccatccaattgagatcagacaactcacatttcaaattctataatcaactttgaagtttaatttcaaaatgcaa |
23409235 |
T |
|
| Q |
997 |
gttgtctcatcgagatcgggtggccaagattgattgatgtcaacttcagcat |
1048 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23409236 |
gttgtcttgtcgagatcgggtggccaagattgattgatgtcaacttcagcat |
23409287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 141; Significance: 2e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 530 - 814
Target Start/End: Original strand, 37215508 - 37215792
Alignment:
| Q |
530 |
ttgcaggaagaaaaggagttcaaggggctgaacctggtataattttgagttggaaccaaagagtaaaagttgcatttggtgcagcaaaaggacttgagtt |
629 |
Q |
| |
|
|||||||||| || || || ||||| |||||||||||| | |||| || ||||||||||||| |||| ||||||||||||||||||||||| | ||||| |
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|
| T |
37215508 |
ttgcaggaaggaagggcgtacaaggtgctgaacctggtccagttttaagctggaaccaaagagcaaaaattgcatttggtgcagcaaaaggattagagtt |
37215607 |
T |
|
| Q |
630 |
tcttcatgagaaagttcaaccttcaatagttcatagagatgttagatccaccaatgttttgctgtttaatgattatgaggctaagattgcagatttcaac |
729 |
Q |
| |
|
||||||||| || ||||| ||||| |||||||| | || ||| |||||| |||||| || | || ||||| |||||||| |||||||| ||||||| | |
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|
| T |
37215608 |
tcttcatgaaaaggttcagccttctatagttcaccgtgacgttcgatccagcaatgtcttattattcaatgactatgaggccaagattgctgatttcagc |
37215707 |
T |
|
| Q |
730 |
ttgacaaatcagtcttctgactcggcagctcgactacattcaacaagagtcttgggaacatttggctatcatgctccagagtata |
814 |
Q |
| |
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|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37215708 |
ttgacaaatcagtcttctgatacggcagctcggctacattcaacaagagtcttgggaacatttggctatcatgctccagagtata |
37215792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 432
Target Start/End: Original strand, 37215156 - 37215274
Alignment:
| Q |
314 |
cagttagcaattgtttcaagactgaagaatgaacacgttgtggggttgatgggatattctcttgaggcaaataacagaattttggtttatcaatatgcaa |
413 |
Q |
| |
|
|||||| || ||||||||||||| ||| |||| | |||| | ||||| |||||||| ||| || ||| | |||||||||||||||||||||||||||| |
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|
| T |
37215156 |
cagttatcagttgtttcaagactcaagcatgacaattttgtagagttgacgggatattgtctagaagcagacaacagaattttggtttatcaatatgcaa |
37215255 |
T |
|
| Q |
414 |
gtcttggtgcgttgcatga |
432 |
Q |
| |
|
|| | ||| | |||||||| |
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|
| T |
37215256 |
gtttgggttctttgcatga |
37215274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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