View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_low_22 (Length: 430)
Name: NF14376_low_22
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 123; Significance: 5e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 209 - 413
Target Start/End: Original strand, 6860934 - 6861133
Alignment:
| Q |
209 |
aatgatacatattataaaatttagataaatatttgtaaccgatacatttnnnnnnnnnttgaaacaaataattgtcannnnnnnnngaaggaaattaatt |
308 |
Q |
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| T |
6860934 |
aatgatacatattataaaatttagataaatatttgtaaccgatacatttaaaaaaaatttgaaacaaataattgtcatttttttttgaaggaaaataatt |
6861033 |
T |
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| Q |
309 |
gtcattcttaaaaatacattggacaggtatttggagcttattcataataatatagactttaacttaacccacatttgatacattgcaacctacttaatat |
408 |
Q |
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| T |
6861034 |
gtcattcttaaaaatacattggacaggtatttggagcttattcataataatatagactttaat-----ccacatttgatacattgcaacctacttaatat |
6861128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 6860782 - 6860851
Alignment:
| Q |
54 |
cttccttttttcttagacttttttcttgtaattaggcctgagtcggccccctggtgtacgctcccttgac |
123 |
Q |
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| T |
6860782 |
cttccttttttcttagacttttttcttgtaattaggcttgagtcggccccctggtgtacgctcctttgac |
6860851 |
T |
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