View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_low_24 (Length: 422)
Name: NF14376_low_24
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 410
Target Start/End: Complemental strand, 5022642 - 5022260
Alignment:
| Q |
18 |
aatactccaagcataaaaagaattagtattagttatcaaatcaaagatgaaaaacagacataacttcaggacatgtcctgttttctatattaatatatat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5022642 |
aatactccaagcataaaaagaattagtattagttatcaaatcaaagatgaaaaacagacataacttcaggacatgtcctgttttctatattaatatatat |
5022543 |
T |
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| Q |
118 |
aacatcacaccatgctctggcagctctgttcagggccctccctgcatctaccaattttttagggttgtgctggaccaaagttcagtttgggcctgaataa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5022542 |
aacatcacaccatgctctggcagctctgttcagggccctccctgcatctaccaattttttagggttgtgctggaccaaagttcagtttgggcctgaataa |
5022443 |
T |
|
| Q |
218 |
ttttgtcactttatacacatgaaatccgtgttcaaaatgctgacacaaacaaaatatgtaaaaccaacagccagaaacatgagatatacattcagcatat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5022442 |
ttttgtcactttatacacatgaaatccgtgttcaaaatgctgacacaaacaaaatatgtaaaaccaacagccagaaacatgagatataca---------- |
5022353 |
T |
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| Q |
318 |
tatacttcataagcattccacatttccaaagcaattttcttacttgaactcggtttttcttcagagtccacttcaagtttcagtttctttgat |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5022352 |
tatacttcataagcattccacatttccaaagcaattttcttacttgaactcggtttttcttcagagtccacttcaagtttccgtttctttgat |
5022260 |
T |
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