View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14376_low_25 (Length: 417)

Name: NF14376_low_25
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14376_low_25
NF14376_low_25
[»] chr4 (22 HSPs)
chr4 (12-401)||(32906025-32906414)
chr4 (169-332)||(2392562-2392726)
chr4 (170-282)||(47519260-47519373)
chr4 (164-276)||(42009623-42009735)
chr4 (169-260)||(35422391-35422482)
chr4 (194-301)||(14124199-14124306)
chr4 (169-308)||(33395307-33395446)
chr4 (194-301)||(53654292-53654399)
chr4 (171-285)||(23066029-23066143)
chr4 (200-301)||(21865193-21865293)
chr4 (200-301)||(21921054-21921154)
chr4 (170-276)||(34341395-34341501)
chr4 (185-298)||(37858192-37858306)
chr4 (200-285)||(24238785-24238870)
chr4 (200-301)||(41260012-41260113)
chr4 (193-266)||(35827797-35827870)
chr4 (169-296)||(54335168-54335295)
chr4 (170-216)||(21621803-21621850)
chr4 (200-299)||(52837957-52838056)
chr4 (230-276)||(40255228-40255274)
chr4 (194-300)||(48497414-48497520)
chr4 (192-344)||(37626713-37626866)
[»] chr2 (15 HSPs)
chr2 (169-341)||(8793780-8793954)
chr2 (193-308)||(38373337-38373452)
chr2 (175-304)||(31645409-31645538)
chr2 (152-301)||(31915054-31915203)
chr2 (195-297)||(18223344-18223447)
chr2 (186-308)||(12800773-12800894)
chr2 (169-227)||(34787874-34787932)
chr2 (192-299)||(8033283-8033388)
chr2 (194-286)||(28036999-28037091)
chr2 (192-300)||(31921233-31921340)
chr2 (169-276)||(16209851-16209958)
chr2 (169-302)||(29140144-29140278)
chr2 (200-274)||(30829961-30830035)
chr2 (192-270)||(35005216-35005294)
chr2 (216-276)||(31836912-31836971)
[»] chr5 (18 HSPs)
chr5 (169-304)||(33085249-33085384)
chr5 (170-308)||(4858039-4858176)
chr5 (195-308)||(14156996-14157109)
chr5 (169-304)||(35626560-35626695)
chr5 (169-298)||(17317343-17317472)
chr5 (190-260)||(10511091-10511161)
chr5 (192-298)||(42641110-42641216)
chr5 (183-308)||(1637978-1638102)
chr5 (171-276)||(42486366-42486471)
chr5 (239-341)||(30251921-30252024)
chr5 (157-260)||(25254889-25254992)
chr5 (157-260)||(25318679-25318782)
chr5 (194-304)||(7611943-7612053)
chr5 (194-276)||(10418595-10418677)
chr5 (214-267)||(3662479-3662532)
chr5 (192-261)||(25731213-25731282)
chr5 (250-282)||(5741782-5741814)
chr5 (200-260)||(34023289-34023349)
[»] chr6 (8 HSPs)
chr6 (160-276)||(7592689-7592805)
chr6 (194-298)||(29694302-29694406)
chr6 (169-304)||(2838972-2839106)
chr6 (169-291)||(2676110-2676231)
chr6 (169-274)||(28985474-28985577)
chr6 (218-304)||(31490373-31490459)
chr6 (169-304)||(23131448-23131583)
chr6 (171-259)||(18592746-18592835)
[»] chr3 (15 HSPs)
chr3 (188-308)||(3432603-3432723)
chr3 (188-282)||(42426200-42426290)
chr3 (188-304)||(51312896-51313012)
chr3 (195-341)||(44765241-44765388)
chr3 (170-276)||(8365210-8365316)
chr3 (169-267)||(41632026-41632124)
chr3 (179-276)||(39047656-39047753)
chr3 (186-306)||(47510736-47510856)
chr3 (169-259)||(38181519-38181609)
chr3 (192-301)||(42005344-42005453)
chr3 (192-255)||(4195386-4195448)
chr3 (192-341)||(54153865-54154015)
chr3 (200-261)||(32375270-32375331)
chr3 (170-214)||(24301955-24301999)
chr3 (209-265)||(25118635-25118691)
[»] scaffold0042 (1 HSPs)
scaffold0042 (169-341)||(83505-83678)
[»] chr7 (13 HSPs)
chr7 (169-304)||(32956496-32956631)
chr7 (201-291)||(40244832-40244923)
chr7 (195-285)||(7833551-7833641)
chr7 (186-301)||(40019482-40019596)
chr7 (188-341)||(31860251-31860405)
chr7 (169-270)||(48983048-48983148)
chr7 (192-260)||(31245279-31245347)
chr7 (169-308)||(44377266-44377410)
chr7 (169-308)||(44386133-44386277)
chr7 (188-270)||(46288859-46288941)
chr7 (195-307)||(47357167-47357279)
chr7 (194-282)||(22680724-22680812)
chr7 (227-276)||(41104093-41104141)
[»] chr1 (15 HSPs)
chr1 (182-297)||(16516809-16516924)
chr1 (192-301)||(12188630-12188739)
chr1 (169-286)||(7330516-7330633)
chr1 (195-299)||(8376326-8376433)
chr1 (188-276)||(46536641-46536729)
chr1 (192-282)||(8772428-8772518)
chr1 (171-248)||(4064117-4064194)
chr1 (194-342)||(44603626-44603775)
chr1 (243-299)||(44018581-44018637)
chr1 (193-276)||(4449044-4449127)
chr1 (239-270)||(52426245-52426276)
chr1 (218-276)||(48615464-48615522)
chr1 (234-276)||(50014206-50014248)
chr1 (195-255)||(15330845-15330905)
chr1 (216-276)||(33673502-33673562)
[»] chr8 (6 HSPs)
chr8 (169-308)||(20164429-20164572)
chr8 (164-265)||(31505500-31505600)
chr8 (200-282)||(41168655-41168738)
chr8 (169-276)||(3670513-3670621)
chr8 (239-270)||(3423786-3423817)
chr8 (209-276)||(43645380-43645447)
[»] scaffold0007 (1 HSPs)
scaffold0007 (200-282)||(246541-246623)


Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 12 - 401
Target Start/End: Complemental strand, 32906414 - 32906025
Alignment:
Q  12 agattatactatgatgggatattcgagaaaatattcaaacagatgagaaagttaaaaagtaaaatgataaggaagtcgaatgttcgattccaaccctact 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32906414 agattatactatgatgggatattcgagaaaatattcaaacagatgagaaagttaaaaaggaaaatgataaggaagtcgaatgttcgattccaaccctact 32906315  T
Q  112 atgatactaatgatactaatattttccgttaaaataagagagatatttaagaaaagcagaatgctaatgagtgtctttgaggcattgattaaagtgttaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32906314 atgatactaatgatactaatattttccgttaaaataagagagatatttaagaaaagcagaatgctattgagtgtctttgaggcattgattaaagtgttaa 32906215  T
Q  212 aattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataaactttccattaatggattcattacca 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32906214 aattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataaactttccattaatggattcattacca 32906115  T
Q  312 aagccctcagggcaccggttaacaagacccttaagaaaataaagctttgcttaccgagatggtgattgaaggggaggagatggttgcaat 401  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32906114 aagtcctcagggcaccggttaacaagacccttaagaaaataaagctttgcttaccgagatggtgattgaaggggaggagatggttgcaat 32906025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 169 - 332
Target Start/End: Complemental strand, 2392726 - 2392562
Alignment:
Q  169 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaac 268  Q
    |||||||||||||||||| ||  || |||| |||||||||||||||| ||||||| |||| ||||| || |||| ||||||| ||||||||| |||||||    
T  2392726 agaatgctaatgagtgtccttagggaattggttaaagtgttaaaatttgtaagttagcataaaaaagtggtgtagttattgccaagacaaaagtaaaaac 2392627  T
Q  269 ttatatttacaagataaactttccattaatggattcatt-accaaagccctcagggcaccggtta 332  Q
    ||  |||||||||| ||| |||| | |||||||||| || ||||| || || ||||||| |||||    
T  2392626 ttgcatttacaagacaaagtttctactaatggattccttaaccaatgctcttagggcactggtta 2392562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 170 - 282
Target Start/End: Complemental strand, 47519373 - 47519260
Alignment:
Q  170 gaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgct-aagacaaaaataaaaac 268  Q
    ||||| ||||||||||  ||| ||||||| ||||||||||||||||||||||||||||||||||| |  ||||||||||| | || |||||| |||||||    
T  47519373 gaatgttaatgagtgttcttggggcattggttaaagtgttaaaattagtaagtttgcattaaaaagttgtgtaattattgataaaaacaaaattaaaaac 47519274  T
Q  269 ttatatttacaaga 282  Q
    |||||||| |||||    
T  47519273 ttatattttcaaga 47519260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 164 - 276
Target Start/End: Original strand, 42009623 - 42009735
Alignment:
Q  164 aaagcagaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaata 263  Q
    |||| |||||| |||||| |||| ||||| ||||  ||||||||||||||||| |||||||| |||||||| |  |||||||||| ||||||||||||||    
T  42009623 aaagaagaatgttaatgaatgtccttgagacattagttaaagtgttaaaattaataagtttgaattaaaaagttgtgtaattattactaagacaaaaata 42009722  T
Q  264 aaaacttatattt 276  Q
    |||| ||||||||    
T  42009723 aaaatttatattt 42009735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 169 - 260
Target Start/End: Original strand, 35422391 - 35422482
Alignment:
Q  169 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaa 260  Q
    |||||| ||| || |||||||| ||||| | |||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||    
T  35422391 agaatgttaacgaatgtctttggggcatcggttaaagtgttaaaattagtaagtttgcattaaaaaatagtgtaattattgataagacaaaa 35422482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 194 - 301
Target Start/End: Original strand, 14124199 - 14124306
Alignment:
Q  194 cattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataaactttcca 293  Q
    ||||| ||||||| ||||||| ||||| |||||||  ||||||| ||||||| ||||||||| |||| ||||||||||||||| ||| | ||| |||| |    
T  14124199 cattggttaaagtattaaaataagtaaatttgcatcgaaaaatggtgtaatttttgctaagaaaaaagtaaaaacttatatttccaaaacaaagtttcta 14124298  T
Q  294 ttaatgga 301  Q
    ||||||||    
T  14124299 ttaatgga 14124306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 169 - 308
Target Start/End: Original strand, 33395307 - 33395446
Alignment:
Q  169 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaac 268  Q
    ||||||||||  | || ||||| | ||||| ||||||| ||||||| ||||||||| ||| ||||| || | ||||||||||||||| | || |||| ||    
T  33395307 agaatgctaacaattgcctttgggacattggttaaagtattaaaatgagtaagtttacatcaaaaagtggtataattattgctaagaaataagtaaagac 33395406  T
Q  269 ttatatttacaagataaactttccattaatggattcatta 308  Q
    || ||||| ||||||||| ||||||||| |||| ||||||    
T  33395407 ttgtatttccaagataaagtttccattattggaatcatta 33395446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 194 - 301
Target Start/End: Original strand, 53654292 - 53654399
Alignment:
Q  194 cattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataaactttcca 293  Q
    ||||| ||||||| ||||||| |||| ||||||||  ||||||| |||||||||||| |||| |||| |||| |||| ||||||||||| ||| |||| |    
T  53654292 cattggttaaagtattaaaataagtatgtttgcatcgaaaaatggtgtaattattgcgaagaaaaaagtaaagacttgtatttacaagacaaagtttcta 53654391  T
Q  294 ttaatgga 301  Q
    || |||||    
T  53654392 tttatgga 53654399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 171 - 285
Target Start/End: Complemental strand, 23066143 - 23066029
Alignment:
Q  171 aatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaactt 270  Q
    |||| ||||||||||||||||| |||||||||||||| ||  |  |||| |||||||| |||||  | |||| |||||  ||||||||||||||||||||    
T  23066143 aatgttaatgagtgtctttgagacattgattaaagtgctatgaaaagtatgtttgcatcaaaaagcgatgtacttatttttaagacaaaaataaaaactt 23066044  T
Q  271 atatttacaagataa 285  Q
     ||||| ||| ||||    
T  23066043 gtatttccaaaataa 23066029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 301
Target Start/End: Original strand, 21865193 - 21865293
Alignment:
Q  200 ttaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataaactttccattaatg 299  Q
    ||||||| ||||||| |||||||||||||  ||||||| |||||| |||||||||| |||| |||||| || ||||| ||||||||| || | |||||||    
T  21865193 ttaaagttttaaaataagtaagtttgcatcgaaaaatggtgtaatcattgctaaga-aaaagtaaaaatttgtatttccaagataaaattactattaatg 21865291  T
Q  300 ga 301  Q
    ||    
T  21865292 ga 21865293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 301
Target Start/End: Original strand, 21921054 - 21921154
Alignment:
Q  200 ttaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataaactttccattaatg 299  Q
    ||||||| ||||||| |||||||||||||  ||||||| |||||| |||||||||| |||| |||||| || ||||| ||||||||| || | |||||||    
T  21921054 ttaaagttttaaaataagtaagtttgcatcgaaaaatggtgtaatcattgctaaga-aaaagtaaaaatttgtatttccaagataaaattactattaatg 21921152  T
Q  300 ga 301  Q
    ||    
T  21921153 ga 21921154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 34341395 - 34341501
Alignment:
Q  170 gaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaact 269  Q
    ||||||||| ||||||  ||||| ||||| |||||||  | ||||  ||||||||| |||||||| |  |||||||||||||||||||||| ||||| ||    
T  34341395 gaatgctaacgagtgttcttgagacattggttaaagttctcaaatatgtaagtttgtattaaaaagttgtgtaattattgctaagacaaaagtaaaatct 34341494  T
Q  270 tatattt 276  Q
    | |||||    
T  34341495 tgtattt 34341501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 185 - 298
Target Start/End: Original strand, 37858192 - 37858306
Alignment:
Q  185 tctttgaggcattgattaaagtgtta-aaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagat 283  Q
    |||||| ||||||| |||||||  || |||| || ||||||||||  |||| || | ||||||||||||||| |||| ||||||||| ||||| ||||||    
T  37858192 tctttggggcattggttaaagtactataaataaggaagtttgcatcgaaaagtgatttaattattgctaagaaaaaagtaaaaacttgtattttcaagat 37858291  T
Q  284 aaactttccattaat 298  Q
    ||| |||| ||||||    
T  37858292 aaagtttctattaat 37858306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 285
Target Start/End: Original strand, 24238785 - 24238870
Alignment:
Q  200 ttaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataa 285  Q
    ||||||||||||||| ||||| |||| |||||||| |  | ||||||||| | |||||||||||||| |||||||||  |||||||    
T  24238785 ttaaagtgttaaaatgagtaaatttgtattaaaaagtaatataattattgttgagacaaaaataaaagcttatatttttaagataa 24238870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 301
Target Start/End: Complemental strand, 41260113 - 41260012
Alignment:
Q  200 ttaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataaactttccattaatg 299  Q
    ||||||| ||||||| |||||||||||||  |||| || |||||| |||| ||| | ||||||||| |||| ||||| ||||| ||| |||| |||||||    
T  41260113 ttaaagtattaaaataagtaagtttgcatcgaaaagtggtgtaatcattgataaaaaaaaaataaagacttgtattttcaagacaaagtttctattaatg 41260014  T
Q  300 ga 301  Q
    ||    
T  41260013 ga 41260012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 266
Target Start/End: Complemental strand, 35827870 - 35827797
Alignment:
Q  193 gcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaa 266  Q
    |||||| ||||| | ||||||| ||||||||||| |  ||||||| ||||||||||| ||||| ||||||||||    
T  35827870 gcattggttaaaatattaaaataagtaagtttgcttcgaaaaatgatgtaattattgttaagaaaaaaataaaa 35827797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 296
Target Start/End: Complemental strand, 54335295 - 54335168
Alignment:
Q  169 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaa-tgttgtaattattgctaagacaaaaataaaaa 267  Q
    ||||| |||||  ||||| ||| ||||||| |||||||  |||||| ||||||||||||| |||||| || || ||||||||| |||| | || |||| |    
T  54335295 agaatactaatatgtgtcattggggcattggttaaagtactaaaataagtaagtttgcataaaaaaagtggtgcaattattgc-aagaaacaagtaaaga 54335197  T
Q  268 cttatatttacaagataaactttccatta 296  Q
    ||| ||||| ||||||||| |||| ||||    
T  54335196 cttgtatttccaagataaaatttctatta 54335168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 21621803 - 21621850
Alignment:
Q  170 gaatgctaatgagtgtct-ttgaggcattgattaaagtgttaaaatta 216  Q
    ||||||||||||||| |  |||||||||||||||||||||||||||||    
T  21621803 gaatgctaatgagtgccccttgaggcattgattaaagtgttaaaatta 21621850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 299
Target Start/End: Complemental strand, 52838056 - 52837957
Alignment:
Q  200 ttaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataaactttccattaatg 299  Q
    ||||||| ||||||| |||||||||||||  ||||||| | ||||||||| ||||| |||| |||| || | ||||| ||| ||||  |||| |||||||    
T  52838056 ttaaagtattaaaataagtaagtttgcatcgaaaaatggtataattattgttaagaaaaaagtaaagacatgtatttccaaaataatgtttctattaatg 52837957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 40255274 - 40255228
Alignment:
Q  230 aaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 276  Q
    |||||||| ||||||||||||||| ||||||||||||| || |||||    
T  40255274 aaaaaatgatgtaattattgctaaaacaaaaataaaaatttgtattt 40255228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 300
Target Start/End: Original strand, 48497414 - 48497520
Alignment:
Q  194 cattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataaactttcca 293  Q
    ||||||||||||| ||||||| | |||||||| ||  |||| || | |||| |||| ||||| ||||||||| |||| ||||| ||||| ||| |||  |    
T  48497414 cattgattaaagtattaaaataaataagtttgtatcgaaaagtggtataatcattgataagaaaaaaataaagacttgtattttcaagacaaagttttta 48497513  T
Q  294 ttaatgg 300  Q
    |||||||    
T  48497514 ttaatgg 48497520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 344
Target Start/End: Original strand, 37626713 - 37626866
Alignment:
Q  192 ggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataaactttc 291  Q
    ||||||| |||||||  |||||| |||||||||||||  |||| || ||| || |||| ||||| |||| |||| |||| ||||| ||||| ||| |||     
T  37626713 ggcattggttaaagtactaaaataagtaagtttgcatcgaaaagtggtgtgatcattgataagaaaaaagtaaagacttgtatttccaagacaaagttta 37626812  T
Q  292 cattaatggattcatt-accaaagccctcagggcaccggttaacaagaccctta 344  Q
     ||||||| | || || ||||  ||||||||| |||  |||| |||||||||||    
T  37626813 tattaatgaaatccttaaccattgccctcaggacactagttagcaagaccctta 37626866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 169 - 341
Target Start/End: Original strand, 8793780 - 8793954
Alignment:
Q  169 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaa-tgttgtaattattgctaagacaaaaataaaaa 267  Q
    |||||| ||||||||| |||||||||| || |||| ||||||||||| |||||||||||| |||||| |  ||| |||||||| ||||||||||||||||    
T  8793780 agaatgttaatgagtgcctttgaggcaatggttaaggtgttaaaatttgtaagtttgcataaaaaaagtagtgtgattattgccaagacaaaaataaaaa 8793879  T
Q  268 cttatatttacaagataaactttccattaatggattcatt-accaaagccctcagggcaccggttaacaagaccc 341  Q
    ||||||||| ||||| ||| |||| |||| | ||||| || ||||| ||||| ||||||| ||||| ||||||||    
T  8793880 cttatatttccaagacaaagtttctattagtagattccttaaccaatgcccttagggcactggttagcaagaccc 8793954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 193 - 308
Target Start/End: Complemental strand, 38373452 - 38373337
Alignment:
Q  193 gcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataaactttcc 292  Q
    |||||| ||||| | ||||||| ||||| |||||||  ||||||| ||||||||||||||||| |||| ||||||||| ||||| ||||||||| ||||     
T  38373452 gcattggttaaaatattaaaataagtaaatttgcatcgaaaaatggtgtaattattgctaagataaaagtaaaaacttgtatttccaagataaagtttct 38373353  T
Q  293 attaatggattcatta 308  Q
    ||||||||| ||||||    
T  38373352 attaatggaatcatta 38373337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 175 - 304
Target Start/End: Original strand, 31645409 - 31645538
Alignment:
Q  175 ctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatat 274  Q
    |||| ||||||| || || ||||| ||||||||||||| ||| ||| |||| ||||||||||| ||||||||||| |||||||||| |||||| ||||||    
T  31645409 ctaacgagtgtccttaagacattggttaaagtgttaaatttaataaatttgtattaaaaaatggtgtaattattgataagacaaaattaaaaatttatat 31645508  T
Q  275 ttacaagataaactttccattaatggattc 304  Q
    ||  |||| ||| |||| ||||| ||||||    
T  31645509 ttctaagacaaaatttcgattaaaggattc 31645538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 152 - 301
Target Start/End: Complemental strand, 31915203 - 31915054
Alignment:
Q  152 agatatttaagaaaagcagaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgct 251  Q
    ||||||| || ||||| |||||| |||  | |||| ||| ||||||| ||||||| ||||||| |||||||||||||  |||| || |||||||||| ||    
T  31915203 agatattaaaaaaaaggagaatggtaaccattgtccttggggcattggttaaagtattaaaataagtaagtttgcatcgaaaagtggtgtaattatttct 31915104  T
Q  252 aagacaaaaataaaaacttatatttacaagataaactttccattaatgga 301  Q
    | || |||| |||| |||| ||||| ||||| ||| |||| |||||||||    
T  31915103 atgaaaaaagtaaagacttgtattttcaagacaaagtttctattaatgga 31915054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 297
Target Start/End: Original strand, 18223344 - 18223447
Alignment:
Q  195 attgattaaagtgttaaaattagtaagtttgcatt-aaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataaactttcca 293  Q
    ||||||||||||||||||||||||| ||||||||| |||||||  ||||||||||| ||| | |||| || ||  |||||||| ||||| ||| ||| ||    
T  18223344 attgattaaagtgttaaaattagtatgtttgcattgaaaaaattgtgtaattattgataaaataaaattagaagtttatattttcaagacaaatttttca 18223443  T
Q  294 ttaa 297  Q
    ||||    
T  18223444 ttaa 18223447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 308
Target Start/End: Original strand, 12800773 - 12800894
Alignment:
Q  186 ctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataa 285  Q
    ||||||||||||| ||||||| |||| || ||||| |||| ||  |||| || | ||||||||| ||||| |||||  |||| |||||||| ||||| ||    
T  12800773 ctttgaggcattggttaaagtattaagataagtaaatttgtatcgaaaattggtctaattattgttaaga-aaaaagtaaaatttatattttcaagacaa 12800871  T
Q  286 actttccattaatggattcatta 308  Q
    | |||| ||||||||| ||||||    
T  12800872 agtttctattaatggaatcatta 12800894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 34787932 - 34787874
Alignment:
Q  169 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgca 227  Q
    |||||||||||||||   ||| |  ||||||||||||||||||||||||||||||||||    
T  34787932 agaatgctaatgagtacttttaatacattgattaaagtgttaaaattagtaagtttgca 34787874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 299
Target Start/End: Complemental strand, 8033388 - 8033283
Alignment:
Q  192 ggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataaactttc 291  Q
    ||||||| ||||||| ||||||| ||||| |||||||  |||| || ||||||||||| ||  | |||||  ||||||| ||||| ||||||||| ||||    
T  8033388 ggcattggttaaagtattaaaataagtaaatttgcatcgaaaagtggtgtaattattgata--aaaaaaagtaaaacttgtattttcaagataaagtttc 8033291  T
Q  292 cattaatg 299  Q
     |||||||    
T  8033290 tattaatg 8033283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 286
Target Start/End: Original strand, 28036999 - 28037091
Alignment:
Q  194 cattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataaa 286  Q
    ||||| ||||||| |||||||  |||||||| ||||||||||||||  |||||||| ||| || ||| || || ||| ||||| |||||||||    
T  28036999 cattggttaaagttttaaaataggtaagtttacattaaaaaatgttaaaattattggtaaaacgaaagtacaatcttgtatttgcaagataaa 28037091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 300
Target Start/End: Original strand, 31921233 - 31921340
Alignment:
Q  192 ggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataaactttc 291  Q
    ||||||| |||||||  | |||| ||||||||||| |  |||| || |||||| |||||||||| ||||||||| |||| ||||| ||||| ||| ||||    
T  31921233 ggcattggttaaagtacttaaataagtaagtttgcctcgaaaagtggtgtaatgattgctaaga-aaaaataaatacttgtattttcaagacaaagtttc 31921331  T
Q  292 cattaatgg 300  Q
     ||||||||    
T  31921332 tattaatgg 31921340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 276
Target Start/End: Complemental strand, 16209958 - 16209851
Alignment:
Q  169 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaac 268  Q
    |||||||||||||||||| |||  |||||| |||||||  |||||| ||||| |||  |  ||||| |  ||||| |||||||||||||||| |||| ||    
T  16209958 agaatgctaatgagtgtccttgtagcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtgtaactattgctaagacaaaagtaaacac 16209859  T
Q  269 ttatattt 276  Q
    || |||||    
T  16209858 ttgtattt 16209851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 302
Target Start/End: Original strand, 29140144 - 29140278
Alignment:
Q  169 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgt-tgtaattattgctaagacaaaaataaaaa 267  Q
    ||||||| |||||||| | |||||  |||| |||||||  |||||| ||||| |||| |  ||||||  | ||||||||||||||||  |||||||||||    
T  29140144 agaatgccaatgagtgaccttgagatattggttaaagtactaaaataagtaattttgaaacaaaaaaattgtgtaattattgctaaggaaaaaataaaaa 29140243  T
Q  268 cttatatttacaagataaactttccattaatggat 302  Q
    ||| ||||| || || ||| |||| ||| ||||||    
T  29140244 cttgtattttcaggacaaaatttctatttatggat 29140278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 274
Target Start/End: Original strand, 30829961 - 30830035
Alignment:
Q  200 ttaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatat 274  Q
    ||||| ||||||||||| ||| |||  |||||||| || ||||||||||| |||||||||| |  ||||||||||    
T  30829961 ttaaaatgttaaaattaataaatttatattaaaaagtggtgtaattattggtaagacaaaagttcaaacttatat 30830035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 270
Target Start/End: Original strand, 35005216 - 35005294
Alignment:
Q  192 ggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaactt 270  Q
    ||||||| |||||||  |||||| |||||||||||||  |||| || |||||| |||||||||| |||| |||| ||||    
T  35005216 ggcattggttaaagtactaaaataagtaagtttgcatcgaaaagtggtgtaatcattgctaagaaaaaagtaaagactt 35005294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 31836912 - 31836971
Alignment:
Q  216 agtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 276  Q
    ||||| ||||||||||||| ||| |||| ||||||||||| |||| |||||| ||||||||    
T  31836912 agtaaatttgcattaaaaattgt-gtaaatattgctaagataaaagtaaaaatttatattt 31836971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 169 - 304
Target Start/End: Original strand, 33085249 - 33085384
Alignment:
Q  169 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaac 268  Q
    |||||||||||||||||| ||    ||||| |||||||||||||||||| ||||||||||  |||| || |||| ||||||||||||||||| ||||||     
T  33085249 agaatgctaatgagtgtccttagaacattggttaaagtgttaaaattagcaagtttgcatacaaaagtggtgtagttattgctaagacaaaagtaaaaat 33085348  T
Q  269 ttatatttacaagataaactttccattaatggattc 304  Q
    |||||||| ||||| ||| |||| | ||||||||||    
T  33085349 ttatattttcaagacaaagtttctactaatggattc 33085384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 170 - 308
Target Start/End: Original strand, 4858039 - 4858176
Alignment:
Q  170 gaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaact 269  Q
    ||||| |||||||||| ||||  | ||||  |||| |||||||||||||||||||| |||||||| || |||||||||||||||||||||| |||||| |    
T  4858039 gaatgttaatgagtgtttttggagtattggataaaatgttaaaattagtaagtttgtattaaaaa-tgatgtaattattgctaagacaaaagtaaaaatt 4858137  T
Q  270 tatatttacaagataaactttccattaatggattcatta 308  Q
    |||||||| |||| ||| ||   || |||||||||||||    
T  4858138 tatatttataagacaaagttaatatcaatggattcatta 4858176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 195 - 308
Target Start/End: Complemental strand, 14157109 - 14156996
Alignment:
Q  195 attgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataaactttccat 294  Q
    |||| |||||||  |||||| ||||||||||||| || || || ||||||||||| |||||||||| |||||| || ||||||||||||||| |||| ||    
T  14157109 attggttaaagttgtaaaataagtaagtttgcatcaataagtgatgtaattattgataagacaaaagtaaaaatttgtatttacaagataaaatttctat 14157010  T
Q  295 taatggattcatta 308  Q
    ||| ||||||||||    
T  14157009 taaaggattcatta 14156996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 169 - 304
Target Start/End: Original strand, 35626560 - 35626695
Alignment:
Q  169 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaac 268  Q
    |||||| ||||||||| ||||||  ||| | |||| |||||||||||||||| ||||||| ||||| |  ||  ||||||| |||||||||| |||||||    
T  35626560 agaatgttaatgagtgcctttgatacatgggttaaggtgttaaaattagtaaatttgcataaaaaagtagtgcgattattggtaagacaaaagtaaaaac 35626659  T
Q  269 ttatatttacaagataaactttccattaatggattc 304  Q
    |||||||| ||| | ||| |||| ||||||||||||    
T  35626660 ttatattttcaaaacaaaatttctattaatggattc 35626695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 169 - 298
Target Start/End: Original strand, 17317343 - 17317472
Alignment:
Q  169 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaac 268  Q
    |||||| ||| ||||||| ||||||||||| ||||||||||||||||| ||| ||||||| ||||| || ||| ||||||  |||||||||  |||||      
T  17317343 agaatgttaacgagtgtccttgaggcattggttaaagtgttaaaattaataaatttgcatcaaaaagtggtgtgattattattaagacaaaggtaaaagt 17317442  T
Q  269 ttatatttacaagataaactttccattaat 298  Q
    || ||||| ||||| ||| |||| ||||||    
T  17317443 ttgtatttccaagacaaagtttctattaat 17317472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 10511091 - 10511161
Alignment:
Q  190 gaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaa 260  Q
    ||||||||| |||||||  |||||| ||||| |||||||| ||||||| ||||||||||||||||| ||||    
T  10511091 gaggcattggttaaagtagtaaaatgagtaactttgcattgaaaaatggtgtaattattgctaagaaaaaa 10511161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 192 - 298
Target Start/End: Original strand, 42641110 - 42641216
Alignment:
Q  192 ggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataaactttc 291  Q
    ||||||| |||||||  |||||| |||||||||||||  ||||||| |||||| |||| ||||| |||| |||| |||| ||||| ||||| ||| ||||    
T  42641110 ggcattggttaaagtactaaaataagtaagtttgcatcgaaaaatggtgtaatcattgataagaaaaaagtaaagacttgtattttcaagacaaagtttc 42641209  T
Q  292 cattaat 298  Q
     ||||||    
T  42641210 tattaat 42641216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 308
Target Start/End: Complemental strand, 1638102 - 1637978
Alignment:
Q  183 tgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaaga 282  Q
    |||||||| ||||||||||||||   |||||| | ||||||||||| ||||| |  ||||||||||||||||| |||| |||||| || ||||| |||||    
T  1638102 tgtctttg-ggcattgattaaagaactaaaataaataagtttgcatcaaaaagttgtgtaattattgctaagaaaaaagtaaaaatttgtatttccaaga 1638004  T
Q  283 taaactttccattaatggattcatta 308  Q
     ||| |||  |||||| || ||||||    
T  1638003 caaaatttatattaatagaatcatta 1637978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 276
Target Start/End: Original strand, 42486366 - 42486471
Alignment:
Q  171 aatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaactt 270  Q
    |||| |||||||||||||| |  |||||||||||||||||||||||||||  ||  |||||||| ||   ||||||||| || || |||| |||||||||    
T  42486366 aatgttaatgagtgtctttaaaacattgattaaagtgttaaaattagtaaagttttattaaaaagtggcttaattattgataggataaaattaaaaactt 42486465  T
Q  271 atattt 276  Q
    | ||||    
T  42486466 acattt 42486471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 341
Target Start/End: Complemental strand, 30252024 - 30251921
Alignment:
Q  239 tgtaattattgctaagacaaaaataaaaacttatatttacaagataaactttccattaatggattcatt-accaaagccctcagggcaccggttaacaag 337  Q
    ||||||||||||||||| |||| |||| |||| ||||| ||||| ||| |||| ||||||||| || || ||||  ||||| ||||||| ||||| ||||    
T  30252024 tgtaattattgctaagaaaaaagtaaagacttgtatttccaagacaaaatttctattaatggaatccttaaccattgcccttagggcactggttaccaag 30251925  T
Q  338 accc 341  Q
    ||||    
T  30251924 accc 30251921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 260
Target Start/End: Complemental strand, 25254992 - 25254889
Alignment:
Q  157 tttaagaaaagcagaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagac 256  Q
    ||||||| ||| |||||| ||||||||  | ||||  ||| | |||| ||||||||||||||||||||| || ||||| |  ||| ||||||| ||||||    
T  25254992 tttaagataagaagaatgttaatgagtacccttgaaacataggttaacgtgttaaaattagtaagtttgtataaaaaattagtgtgattattgttaagac 25254893  T
Q  257 aaaa 260  Q
    ||||    
T  25254892 aaaa 25254889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 260
Target Start/End: Complemental strand, 25318782 - 25318679
Alignment:
Q  157 tttaagaaaagcagaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagac 256  Q
    ||||||| ||| |||||| ||||||||  | ||||  ||| | |||| ||||||||||||||||||||| || ||||| |  ||| ||||||| ||||||    
T  25318782 tttaagataagaagaatgttaatgagtacccttgaaacataggttaacgtgttaaaattagtaagtttgtataaaaaattagtgtgattattgttaagac 25318683  T
Q  257 aaaa 260  Q
    ||||    
T  25318682 aaaa 25318679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 304
Target Start/End: Complemental strand, 7612053 - 7611943
Alignment:
Q  194 cattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataaactttcca 293  Q
    ||||| ||||||| ||||||| || || || ||| ||||||||  | ||||||||||||| |||||| ||||   || ||||| ||||||||| |||| |    
T  7612053 cattggttaaagtattaaaataagcaacttcgcaataaaaaattgtttaattattgctaaaacaaaagtaaatttttttattttcaagataaagtttcta 7611954  T
Q  294 ttaatggattc 304  Q
    |||||| ||||    
T  7611953 ttaatgaattc 7611943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 276
Target Start/End: Original strand, 10418595 - 10418677
Alignment:
Q  194 cattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 276  Q
    |||| |||||||| ||||||| ||||| |||| | |||||  |  ||||||||||| ||| |||||||||||||||| |||||    
T  10418595 cattaattaaagtattaaaataagtaactttgaaataaaatgttgtgtaattattgttaaaacaaaaataaaaacttgtattt 10418677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 3662479 - 3662532
Alignment:
Q  214 ttagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaa 267  Q
    |||||||||||| || |||||||| |||| || ||| |||||||||||||||||    
T  3662479 ttagtaagtttgaataaaaaaatggtgtagtttttgttaagacaaaaataaaaa 3662532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 25731213 - 25731282
Alignment:
Q  192 ggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaa 261  Q
    ||||||| |||||||  |||||| |||||||||||||  |||| |  ||||||||||||||||| |||||    
T  25731213 ggcattggttaaagtactaaaataagtaagtttgcatagaaaagttgtgtaattattgctaagaaaaaaa 25731282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 282
Target Start/End: Complemental strand, 5741814 - 5741782
Alignment:
Q  250 ctaagacaaaaataaaaacttatatttacaaga 282  Q
    ||||||||||||||||| |||||||||||||||    
T  5741814 ctaagacaaaaataaaagcttatatttacaaga 5741782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 34023349 - 34023289
Alignment:
Q  200 ttaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaa 260  Q
    |||||||  |||||| | |||||||| |||||||| || | ||||||||||||||||||||    
T  34023349 ttaaagttctaaaataattaagtttgtattaaaaagtggtataattattgctaagacaaaa 34023289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 160 - 276
Target Start/End: Original strand, 7592689 - 7592805
Alignment:
Q  160 aagaaaagcagaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaa 259  Q
    |||||||  |||||| ||| ||||||||||||| ||||||||||||| ||||||| |||||||||  |||||||| || |||||||||||||| |||||     
T  7592689 aagaaaatgagaatgttaaagagtgtctttgagacattgattaaagtattaaaataagtaagtttaaattaaaaagtgatgtaattattgctaggacaag 7592788  T
Q  260 aataaaaacttatattt 276  Q
    | ||||||||| |||||    
T  7592789 agtaaaaacttgtattt 7592805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 194 - 298
Target Start/End: Original strand, 29694302 - 29694406
Alignment:
Q  194 cattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataaactttcca 293  Q
    ||||| |||||||  |||||| |||||||||||||| |||| || ||||||||||| |||||||||||||||||||| ||||| ||||||||  |||| |    
T  29694302 cattggttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaattattgttaagacaaaaataaaaacttgtatttccaagataatatttcta 29694401  T
Q  294 ttaat 298  Q
    |||||    
T  29694402 ttaat 29694406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 169 - 304
Target Start/End: Original strand, 2838972 - 2839106
Alignment:
Q  169 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaac 268  Q
    |||||||||||||||| |||||  |||||| ||||  | ||||||||||||||||||||| ||||| || |||| ||||||| || |||||| ||||||     
T  2838972 agaatgctaatgagtgcctttggagcattggttaagttcttaaaattagtaagtttgcatcaaaaagtggtgtagttattgc-aaaacaaaagtaaaaat 2839070  T
Q  269 ttatatttacaagataaactttccattaatggattc 304  Q
    |||||||| ||||| ||| |||| | ||||||||||    
T  2839071 ttatattttcaagacaaagtttctactaatggattc 2839106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 169 - 291
Target Start/End: Original strand, 2676110 - 2676231
Alignment:
Q  169 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaac 268  Q
    |||||| ||| |||||| || |||| |||| ||||| |||||||||||||||||||| || |||||||  |||| |||||||||||| || | ||||||     
T  2676110 agaatgttaacgagtgt-ttcgaggtattggttaaaatgttaaaattagtaagtttgtataaaaaaattatgtagttattgctaagataatagtaaaaaa 2676208  T
Q  269 ttatatttacaagataaactttc 291  Q
    |||||||| ||||||||| ||||    
T  2676209 ttatattttcaagataaagtttc 2676231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 169 - 274
Target Start/End: Complemental strand, 28985577 - 28985474
Alignment:
Q  169 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaac 268  Q
    |||| ||||||||||| | |||| |||||| |||| || ||||||| ||||||||||||| ||||  || ||||||||||||| ||||||||||||||||    
T  28985577 agaaggctaatgagtgcccttgatgcattggttaa-gtattaaaataagtaagtttgcatcaaaag-tgatgtaattattgctgagacaaaaataaaaac 28985480  T
Q  269 ttatat 274  Q
    ||||||    
T  28985479 ttatat 28985474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 218 - 304
Target Start/End: Original strand, 31490373 - 31490459
Alignment:
Q  218 taagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataaactttccattaatggattc 304  Q
    |||||||||| ||||||||| ||||||||||  | |||||||| ||||||||||||||| |||||| ||  ||| ||||||||||||    
T  31490373 taagtttgcaataaaaaatggtgtaattattaattagacaaaagtaaaaacttatattttcaagatcaaaattctattaatggattc 31490459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 169 - 304
Target Start/End: Complemental strand, 23131583 - 23131448
Alignment:
Q  169 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaac 268  Q
    ||||||||||| | | || |||||  |||| |||||||  |||||| ||||| |||||| |||||| |   |||||||||||||| |||||| ||||||     
T  23131583 agaatgctaatcaatatccttgagttattggttaaagtactaaaataagtaattttgcaataaaaagttgcgtaattattgctaaaacaaaagtaaaaat 23131484  T
Q  269 ttatatttacaagataaactttccattaatggattc 304  Q
    |||||||| ||||| ||| |||| | ||||||||||    
T  23131483 ttatattttcaagacaaagtttctactaatggattc 23131448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 18592835 - 18592746
Alignment:
Q  171 aatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcat-taaaaaatgttgtaattattgctaagacaaa 259  Q
    |||||||||||||| |||||  | ||||||||||||  |||||| |||||||||||||  |||||||  ||||||||||| ||| |||||    
T  18592835 aatgctaatgagtgcctttggagtattgattaaagttctaaaataagtaagtttgcataaaaaaaatagtgtaattattgataaaacaaa 18592746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 188 - 308
Target Start/End: Original strand, 3432603 - 3432723
Alignment:
Q  188 ttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataaac 287  Q
    |||||| |||| |||||||  |||||| | ||||||||||| |||||||| |||||||||||||||||  ||| |||| |||||||||| |||||||||     
T  3432603 ttgaggtattggttaaagtactaaaataaataagtttgcatcaaaaaatgatgtaattattgctaagaacaaagtaaacacttatattttcaagataaag 3432702  T
Q  288 tttccattaatggattcatta 308  Q
    |||| ||||||||| ||||||    
T  3432703 tttctattaatggaatcatta 3432723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 188 - 282
Target Start/End: Original strand, 42426200 - 42426290
Alignment:
Q  188 ttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaaga 282  Q
    ||||| |||||||||||||||||||||    |||||||||| ||||| || ||||||||||| |||||||||||||||||||||||||| |||||    
T  42426200 ttgagacattgattaaagtgttaaaat----aagtttgcataaaaaagtggtgtaattattgttaagacaaaaataaaaacttatatttccaaga 42426290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 188 - 304
Target Start/End: Complemental strand, 51313012 - 51312896
Alignment:
Q  188 ttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataaac 287  Q
    |||| |||||| |||| |||||||||||||||||||||||| ||||| || | | |||||| | ||||||||||||||| ||||||||| |||||||||     
T  51313012 ttgaagcattggttaatgtgttaaaattagtaagtttgcatcaaaaagtggtatgattattaccaagacaaaaataaaagcttatattttcaagataaaa 51312913  T
Q  288 tttccattaatggattc 304  Q
    |||  |||| |||||||    
T  51312912 tttatattagtggattc 51312896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 195 - 341
Target Start/End: Complemental strand, 44765388 - 44765241
Alignment:
Q  195 attgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataaactttccat 294  Q
    |||||||||||| ||||||| |||||||||||||| |||| || ||||||||||||||||| | || |||| |||| ||||| ||| | ||| |||||||    
T  44765388 attgattaaagtattaaaataagtaagtttgcattgaaaagtggtgtaattattgctaagaaataagtaaagacttgtatttccaaaacaaagtttccat 44765289  T
Q  295 taatggattcatt-accaaagccctcagggcaccggttaacaagaccc 341  Q
    || |||| || || ||||  ||||| ||||||| ||||| ||| ||||    
T  44765288 tattggaatccttaaccactgcccttagggcactggttagcaataccc 44765241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 8365210 - 8365316
Alignment:
Q  170 gaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaact 269  Q
    ||||||||| || || | ||| || |||| ||||||||||||||||||||||||| || ||||||||| ||||||| ||  | |||||||| ||||||||    
T  8365210 gaatgctaacgaatgcccttggggtattggttaaagtgttaaaattagtaagttttcaataaaaaatggtgtaattttttattagacaaaactaaaaact 8365309  T
Q  270 tatattt 276  Q
    |||||||    
T  8365310 tatattt 8365316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 169 - 267
Target Start/End: Complemental strand, 41632124 - 41632026
Alignment:
Q  169 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaa 267  Q
    |||||| ||||||||||  ||||| ||| ||||||| |  |||||| || ||||||||| ||||||||  |||||||||| ||||||||||||||||||    
T  41632124 agaatgataatgagtgttcttgagacatcgattaaaattctaaaataagcaagtttgcaataaaaaatagtgtaattattactaagacaaaaataaaaa 41632026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 276
Target Start/End: Complemental strand, 39047753 - 39047656
Alignment:
Q  179 tgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 276  Q
    |||||||| |||| ||| || |||| |||||||||||||||||||||||||||||| || | |  ||||| ||||||||||| |||||  ||||||||    
T  39047753 tgagtgtccttgaagcagtggttaaggtgttaaaattagtaagtttgcattaaaaagtggtatggttattactaagacaaaagtaaaagtttatattt 39047656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 186 - 306
Target Start/End: Original strand, 47510736 - 47510856
Alignment:
Q  186 ctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataa 285  Q
    ||||| |||||||||||||||  |||||| |||||||||| ||  ||||||| ||||||||||| ||||| ||||| ||| | || ||||| ||||| |     
T  47510736 ctttggggcattgattaaagtactaaaataagtaagtttgtatcgaaaaatggtgtaattattgttaagaaaaaaacaaagatttgtatttccaagacat 47510835  T
Q  286 actttccattaatggattcat 306  Q
    | |||| ||||||||| ||||    
T  47510836 agtttctattaatggaatcat 47510856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 259
Target Start/End: Original strand, 38181519 - 38181609
Alignment:
Q  169 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaa 259  Q
    |||||| ||||||||  | |||||  |||| ||||||||||||||||||| | ||||||| ||||| || ||| |||||||||||||||||    
T  38181519 agaatgttaatgagttcccttgagatattggttaaagtgttaaaattagttattttgcatcaaaaagtggtgtgattattgctaagacaaa 38181609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 301
Target Start/End: Original strand, 42005344 - 42005453
Alignment:
Q  192 ggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataaactttc 291  Q
    ||||||| |||||||  || ||| |||||||||||||  ||||||| | ||||||||| ||||| |||| |||| | || ||||| ||| ||||| ||||    
T  42005344 ggcattggttaaagtactacaataagtaagtttgcatctaaaaatggtctaattattgttaagaaaaaagtaaagatttgtattttcaatataaaatttc 42005443  T
Q  292 cattaatgga 301  Q
     |||||||||    
T  42005444 tattaatgga 42005453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 192 - 255
Target Start/End: Complemental strand, 4195448 - 4195386
Alignment:
Q  192 ggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaaga 255  Q
    ||||||| |||||||  |||||| ||||||||||||| |||||||| ||||||| |||||||||    
T  4195448 ggcattggttaaagtactaaaataagtaagtttgcataaaaaaatggtgtaatt-ttgctaaga 4195386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 341
Target Start/End: Original strand, 54153865 - 54154015
Alignment:
Q  192 ggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataaactttc 291  Q
    ||||||| |||||||  |||||| |||||||||||||  |||| || | |||| |||| ||||| |||| |||| |||| ||||| || || ||| |||     
T  54153865 ggcattggttaaagtactaaaataagtaagtttgcatcgaaaagtggtttaatcattgataagaaaaaagtaaagacttgtatttccatgacaaagtttt 54153964  T
Q  292 cattaatggattcatt-accaaagccctcagggcaccggttaacaagaccc 341  Q
     ||||||||| || || ||||  ||||| ||||||| ||||| ||||||||    
T  54153965 tattaatggaatctttaaccactgcccttagggcactggttagcaagaccc 54154015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 32375331 - 32375270
Alignment:
Q  200 ttaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaa 261  Q
    |||||||  |||||| |||||||| ||||| |||| || ||||||||||||||||| |||||    
T  32375331 ttaaagtactaaaataagtaagttagcattgaaaagtggtgtaattattgctaagaaaaaaa 32375270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 24301999 - 24301955
Alignment:
Q  170 gaatgctaatgagtgtctttgaggcattgattaaagtgttaaaat 214  Q
    ||||||||||||||| |||||||| |||  |||||||||||||||    
T  24301999 gaatgctaatgagtgcctttgaggtattagttaaagtgttaaaat 24301955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 25118691 - 25118635
Alignment:
Q  209 taaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaa 265  Q
    |||||| |||||||||||||| |||| || |||||| |||||||||| |||| ||||    
T  25118691 taaaataagtaagtttgcattgaaaagtggtgtaatcattgctaagaaaaaagtaaa 25118635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 169 - 341
Target Start/End: Complemental strand, 83678 - 83505
Alignment:
Q  169 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaac 268  Q
    |||||| ||||||||| |||||  | |||  || |||| ||||||||||||||||||||||||||| |  ||||||||||| |||||||||| ||||||     
T  83678 agaatgttaatgagtgcctttggagtattcgttgaagtattaaaattagtaagtttgcattaaaaagtagtgtaattattgataagacaaaagtaaaaat 83579  T
Q  269 ttatatttacaagataaactttccattaatggattcatta-ccaaagccctcagggcaccggttaacaagaccc 341  Q
    ||||||||  |||| ||| |||  ||||| |||||| |||  ||  ||||| || |||||||||| ||||||||    
T  83578 ttatatttcgaagacaaagtttatattaaaggattccttatgcattgcccttagagcaccggttagcaagaccc 83505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 169 - 304
Target Start/End: Original strand, 32956496 - 32956631
Alignment:
Q  169 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaac 268  Q
    |||||||||||||||| | ||||||||||| ||||  || ||||||| |||| ||||||| |||||||| ||| |||||||  ||||||||| |||||      
T  32956496 agaatgctaatgagtgcccttgaggcattggttaagctgataaaattcgtaactttgcatcaaaaaatggtgtgattattggcaagacaaaagtaaaagt 32956595  T
Q  269 ttatatttacaagataaactttccattaatggattc 304  Q
    |||||||| ||||| | | |||| |||| |||||||    
T  32956596 ttatatttccaagacagaatttctattagtggattc 32956631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 201 - 291
Target Start/End: Original strand, 40244832 - 40244923
Alignment:
Q  201 taaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaat-aaaaacttatatttacaagataaactttc 291  Q
    |||||||||||||||| ||| |||||| |||||||||||||||||||| | | ||||||||| ||||| ||||||||  |||||||| ||||    
T  40244832 taaagtgttaaaattaataaatttgcaataaaaaatgttgtaattattaccacgacaaaaataaaaaaattatatttttaagataaagtttc 40244923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 195 - 285
Target Start/End: Complemental strand, 7833641 - 7833551
Alignment:
Q  195 attgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataa 285  Q
    |||| |||||||  |||||| | ||||||||||| |||||||| ||||||||||||||||| |||| |||| |||| ||||| ||||||||    
T  7833641 attggttaaagtactaaaataaataagtttgcataaaaaaatgatgtaattattgctaagaaaaaagtaaagacttgtatttccaagataa 7833551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 301
Target Start/End: Complemental strand, 40019596 - 40019482
Alignment:
Q  186 ctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataa 285  Q
    ||||| ||||||| ||||||| ||||||| | |||||||||||| |||| || ||| ||||||||||||| |||| |||| |||| ||||| ||||| ||    
T  40019596 ctttggggcattggttaaagtattaaaataaataagtttgcattgaaaagtgatgt-attattgctaagaaaaaagtaaagacttgtatttccaagacaa 40019498  T
Q  286 actttccattaatgga 301  Q
    | |||  |||||||||    
T  40019497 agtttttattaatgga 40019482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 341
Target Start/End: Complemental strand, 31860405 - 31860251
Alignment:
Q  188 ttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataaac 287  Q
    ||||| ||||| |||||||  |||||| |||||||||||||  ||||||| ||||||||||| |||||  ||| |||| |||| ||||| ||||| |||     
T  31860405 ttgagccattggttaaagtactaaaatgagtaagtttgcatcgaaaaatggtgtaattattgataagaagaaagtaaagacttgtatttccaagacaaag 31860306  T
Q  288 tttccattaatggattcatt-accaaagccctcagggcaccggttaacaagaccc 341  Q
    ||| ||||| | || || || ||||  ||||| ||||||| ||||| ||||||||    
T  31860305 ttttcattattagaatctttaaccattgcccttagggcactggttagcaagaccc 31860251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 270
Target Start/End: Complemental strand, 48983148 - 48983048
Alignment:
Q  169 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaac 268  Q
    |||||| ||||||||||| ||||||||||  ||||| || |||||||| ||||||| ||||||||  || ||||||||||  |||  |||||||||||||    
T  48983148 agaatgttaatgagtgtcattgaggcatttgttaaaatgataaaattaataagtttacattaaaatgtg-tgtaattattcttaaagcaaaaataaaaac 48983050  T
Q  269 tt 270  Q
    ||    
T  48983049 tt 48983048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 31245347 - 31245279
Alignment:
Q  192 ggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaa 260  Q
    ||||||| || ||||  |||||| |||||||||||||  ||||||| ||||||||||||||||||||||    
T  31245347 ggcattggttgaagtactaaaataagtaagtttgcatcgaaaaatggtgtaattattgctaagacaaaa 31245279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 308
Target Start/End: Complemental strand, 44377410 - 44377266
Alignment:
Q  169 agaatgctaatgagtgtctttgagg-cattgattaaagtgttaaaattagtaagtttgcattaaaaaa----tgttgtaattattgctaagacaaaaata 263  Q
    |||||||||||| ||||||||| || |||| |||||| | |||||||||||||||||  || ||||||    |   ||||||| |  |||||||||||||    
T  44377410 agaatgctaatgggtgtctttgggggcattaattaaaatattaaaattagtaagtttttataaaaaaaaaaatagcgtaattactattaagacaaaaata 44377311  T
Q  264 aaaacttatatttacaagataaactttccattaatggattcatta 308  Q
    |||||||||||||  |||| |||  ||  ||||||||||||||||    
T  44377310 aaaacttatatttttaagacaaaacttttattaatggattcatta 44377266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 308
Target Start/End: Complemental strand, 44386277 - 44386133
Alignment:
Q  169 agaatgctaatgagtgtctttgagg-cattgattaaagtgttaaaattagtaagtttgcattaaaaaa----tgttgtaattattgctaagacaaaaata 263  Q
    |||||||||||| ||||||||| || |||| |||||| | |||||||||||||||||  || ||||||    |   ||||||| |  |||||||||||||    
T  44386277 agaatgctaatgggtgtctttgggggcattaattaaaatattaaaattagtaagtttttataaaaaaaaaaatagcgtaattactattaagacaaaaata 44386178  T
Q  264 aaaacttatatttacaagataaactttccattaatggattcatta 308  Q
    |||||||||||||  |||| |||  ||  ||||||||||||||||    
T  44386177 aaaacttatatttttaagacaaaacttttattaatggattcatta 44386133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 46288941 - 46288859
Alignment:
Q  188 ttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaactt 270  Q
    ||||||||||||| || ||   ||||| || || |||||| ||||||||  ||||||||||||||||||||||| ||||||||    
T  46288941 ttgaggcattgatcaacgtaccaaaataagcaattttgcaataaaaaattatgtaattattgctaagacaaaaacaaaaactt 46288859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 195 - 307
Target Start/End: Original strand, 47357167 - 47357279
Alignment:
Q  195 attgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgct-aagacaaaaataaaaacttatatttacaagataaactttcca 293  Q
    ||||||| |||| ||||||| ||||||||| ||| ||| | |  ||| ||||||| | |||| ||||||||||||||||||||| |||||||| |||| |    
T  47357167 attgatttaagtattaaaataagtaagtttacataaaatagtaatgtgattattgtttaagataaaaataaaaacttatattta-aagataaaatttcta 47357265  T
Q  294 ttaatggattcatt 307  Q
    ||||  ||||||||    
T  47357266 ttaagagattcatt 47357279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 22680724 - 22680812
Alignment:
Q  194 cattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaaga 282  Q
    ||||| |||||||  | |||| |||||||||||||  |||| || |||||| |||||||||| ||||||||| |||| ||||| |||||    
T  22680724 cattggttaaagtacttaaataagtaagtttgcatcgaaaagtggtgtaatgattgctaagaaaaaaataaagacttttattttcaaga 22680812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 276
Target Start/End: Complemental strand, 41104141 - 41104093
Alignment:
Q  227 attaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 276  Q
    ||||||||||  ||||||||||| |||||| |||||||||||||||||||    
T  41104141 attaaaaaatagtgtaattattgttaagac-aaaataaaaacttatattt 41104093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 182 - 297
Target Start/End: Complemental strand, 16516924 - 16516809
Alignment:
Q  182 gtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaag 281  Q
    |||||||||  |||||||||||||| ||||||| |||||||||| |||||||| || | |||||||||  ||||||||||||||  |||||||||  |||    
T  16516924 gtgtctttggagcattgattaaagttttaaaatgagtaagtttgtattaaaaattggtataattattgtaaagacaaaaataaagtcttatatttcaaag 16516825  T
Q  282 ataaactttccattaa 297  Q
    | ||| |||| |||||    
T  16516824 acaaattttctattaa 16516809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 192 - 301
Target Start/End: Original strand, 12188630 - 12188739
Alignment:
Q  192 ggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataaactttc 291  Q
    |||||||  ||||||  |||||| ||||| |||| ||| ||||||| ||||||||||||||||| |||| |||||| || ||||| ||||| ||| ||||    
T  12188630 ggcattggataaagtactaaaataagtaattttgtattgaaaaatggtgtaattattgctaagaaaaaagtaaaaatttgtatttccaagacaaagtttc 12188729  T
Q  292 cattaatgga 301  Q
     |||||||||    
T  12188730 tattaatgga 12188739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 286
Target Start/End: Original strand, 7330516 - 7330633
Alignment:
Q  169 agaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaac 268  Q
    |||||| ||||||||||| ||||  ||||| |||||||  |||||| ||||||  |||||| |||| || || |||||||||||||| ||||  ||| ||    
T  7330516 agaatgttaatgagtgtccttgaaacattggttaaagtactaaaataagtaagcatgcattgaaaagtgatgcaattattgctaagaaaaaagcaaatac 7330615  T
Q  269 ttatatttacaagataaa 286  Q
    || ||||| |||||||||    
T  7330616 ttgtattttcaagataaa 7330633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 299
Target Start/End: Original strand, 8376326 - 8376433
Alignment:
Q  195 attgattaaagtgttaaaattagtaagtttgcattaaaaaa---tgttgtaattattgctaagacaaaaataaaaacttatatttacaagataaactttc 291  Q
    |||| ||||||| ||||||| ||||||||||||| ||||||   || ||||||||||| ||  | |||| ||||||||||||||| ||| ||||| ||||    
T  8376326 attggttaaagtattaaaataagtaagtttgcataaaaaaaaaatggtgtaattattgttagaaaaaaagtaaaaacttatatttccaaaataaaatttc 8376425  T
Q  292 cattaatg 299  Q
     |||||||    
T  8376426 tattaatg 8376433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 276
Target Start/End: Original strand, 46536641 - 46536729
Alignment:
Q  188 ttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 276  Q
    ||||| ||||||||||||| ||||||| ||||| |||||| || ||| |  |||| |||||| |||||||||| ||||||||| |||||    
T  46536641 ttgagacattgattaaagtattaaaataagtaattttgcaatacaaagttgtgtagttattgataagacaaaagtaaaaacttgtattt 46536729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 282
Target Start/End: Complemental strand, 8772518 - 8772428
Alignment:
Q  192 ggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaaga 282  Q
    ||||||| |||||||  |||||| ||||| |||||||  |||| || |||||||||||| ||||||||| |||| |||| ||||| |||||    
T  8772518 ggcattggttaaagtactaaaataagtaaatttgcatcgaaaagtggtgtaattattgccaagacaaaagtaaagacttgtattttcaaga 8772428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 4064117 - 4064194
Alignment:
Q  171 aatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattatt 248  Q
    |||| |||||||||||||| ||  |||| ||||||| |||||| ||||||||||| |||||||| |  ||||||||||    
T  4064117 aatgttaatgagtgtctttaagatattggttaaagtattaaaagtagtaagtttgaattaaaaagttgtgtaattatt 4064194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 194 - 342
Target Start/End: Original strand, 44603626 - 44603775
Alignment:
Q  194 cattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaagataaactttcca 293  Q
    |||||||||||||  | |||| ||||||||||| | ||||| || |||||| |||||||||| ||||||||| | || || || ||||| ||| |||  |    
T  44603626 cattgattaaagtacttaaataagtaagtttgcctcaaaaagtggtgtaatgattgctaagaaaaaaataaagatttgtactttcaagacaaagtttata 44603725  T
Q  294 ttaat-ggattcattaccaaagccctcagggcaccggttaacaagaccct 342  Q
    ||||| |||| | | ||||  ||||| ||||||| ||||| |||||||||    
T  44603726 ttaatgggatccttaaccattgcccttagggcactggttagcaagaccct 44603775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 44018637 - 44018581
Alignment:
Q  243 attattgctaagacaaaaataaaaacttatatttacaagataaactttccattaatg 299  Q
    ||||||||||| ||||||||||||| ||||||||  |||||||| |||| |||||||    
T  44018637 attattgctaaaacaaaaataaaaatttatatttttaagataaagtttctattaatg 44018581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 276
Target Start/End: Complemental strand, 4449127 - 4449044
Alignment:
Q  193 gcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 276  Q
    |||||| |||||||  |||||| | || ||||| ||| ||||||| ||||||||||| ||||| |||||| ||||||| |||||    
T  4449127 gcattggttaaagtactaaaataaataggtttgtattgaaaaatggtgtaattattgttaagaaaaaaattaaaacttgtattt 4449044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 239 - 270
Target Start/End: Original strand, 52426245 - 52426276
Alignment:
Q  239 tgtaattattgctaagacaaaaataaaaactt 270  Q
    ||||||||||||||||||||||||||||||||    
T  52426245 tgtaattattgctaagacaaaaataaaaactt 52426276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 48615464 - 48615522
Alignment:
Q  218 taagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 276  Q
    ||||||||||| |||||||  ||||||||| | ||||| |||||||||||||| |||||    
T  48615464 taagtttgcatcaaaaaattatgtaattatcgttaagataaaaataaaaacttgtattt 48615522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 276
Target Start/End: Complemental strand, 50014248 - 50014206
Alignment:
Q  234 aatgttgtaattattgctaagacaaaaataaaaacttatattt 276  Q
    |||| ||||||||||||||||||||||||||||| || |||||    
T  50014248 aatggtgtaattattgctaagacaaaaataaaaatttgtattt 50014206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 15330845 - 15330905
Alignment:
Q  195 attgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaaga 255  Q
    ||||| |||||| ||||||| || ||||||||||  ||||||  |||||||||||||||||    
T  15330845 attgactaaagtattaaaataagaaagtttgcatcgaaaaattgtgtaattattgctaaga 15330905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 33673562 - 33673502
Alignment:
Q  216 agtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 276  Q
    ||||| ||| ||||||||| | ||||||||||| |||||| |||||| |||| ||||||||    
T  33673562 agtaaatttacattaaaaattattgtaattattactaagataaaaatcaaaatttatattt 33673502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 308
Target Start/End: Complemental strand, 20164572 - 20164429
Alignment:
Q  169 agaatgctaatgagtgtctttgagg-cattgattaaagtgttaaaattagtaagtttgcattaaaaaatgtt---gtaattattgctaagacaaaaataa 264  Q
    |||||||||||| ||||||||| || |||| |||||| | |||||||||||||||||  || ||||||   |   ||||||| |  ||||||||||||||    
T  20164572 agaatgctaatgggtgtctttgggggcattaattaaaatattaaaattagtaagtttttataaaaaaaaaatagcgtaattactattaagacaaaaataa 20164473  T
Q  265 aaacttatatttacaagataaactttccattaatggattcatta 308  Q
    ||||||||||||  |||| |||  ||  ||||||||||||||||    
T  20164472 aaacttatatttttaagacaaaacttttattaatggattcatta 20164429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 265
Target Start/End: Original strand, 31505500 - 31505600
Alignment:
Q  164 aaagcagaatgctaatgagtgtctttgaggcattgattaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaata 263  Q
    |||| ||||||||||  | ||||||| |||||||| ||||||| ||||||| ||||| |||| |||||||| |  ||||||||||| |||||||||| ||    
T  31505500 aaaggagaatgctaacaattgtctttaaggcattggttaaagtattaaaataagtaaatttgtattaaaaa-taatgtaattattgttaagacaaaagta 31505598  T
Q  264 aa 265  Q
    ||    
T  31505599 aa 31505600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 282
Target Start/End: Complemental strand, 41168738 - 41168655
Alignment:
Q  200 ttaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaatta-ttgctaagacaaaaataaaaacttatatttacaaga 282  Q
    |||||||  |||||| |||||||||||||| |||| || |||||||| |||||||||||||| |||| |||| ||||| |||||    
T  41168738 ttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaattatttgctaagacaaaagtaaagacttgtatttccaaga 41168655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 276
Target Start/End: Original strand, 3670513 - 3670621
Alignment:
Q  169 agaatgctaatgagtgtctttgaggcattgattaaagtgtt-aaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaa 267  Q
    |||||| ||| |||||||||||   ||||| ||||||| || ||||| |||||||||  |||||||| |  ||||||||||| ||| |||||| ||||||    
T  3670513 agaatgttaacgagtgtctttggaacattggttaaagttttgaaaataagtaagtttttattaaaaagttgtgtaattattgttaaaacaaaattaaaaa 3670612  T
Q  268 cttatattt 276  Q
    ||| |||||    
T  3670613 cttgtattt 3670621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 239 - 270
Target Start/End: Original strand, 3423786 - 3423817
Alignment:
Q  239 tgtaattattgctaagacaaaaataaaaactt 270  Q
    ||||||||||||||||||||||||||||||||    
T  3423786 tgtaattattgctaagacaaaaataaaaactt 3423817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 43645380 - 43645447
Alignment:
Q  209 taaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatattt 276  Q
    |||||| | |||||||||||||||||||  |||| |||||| ||||| ||||||||||  ||||||||    
T  43645380 taaaataaataagtttgcattaaaaaatagtgtagttattgttaagagaaaaataaaattttatattt 43645447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 282
Target Start/End: Complemental strand, 246623 - 246541
Alignment:
Q  200 ttaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaaga 282  Q
    |||||||  |||||| |||||||||||||  |||| || ||||||||||||| ||| |||| ||||||||| ||||| |||||    
T  246623 ttaaagtactaaaataagtaagtttgcatcgaaaagtggtgtaattattgctcagaaaaaagtaaaaacttgtattttcaaga 246541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University