View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14376_low_29 (Length: 403)
Name: NF14376_low_29
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_low_29 |
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| [»] scaffold0045 (1 HSPs) |
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| [»] scaffold0450 (1 HSPs) |
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| [»] scaffold0727 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 157 - 391
Target Start/End: Complemental strand, 49523325 - 49523091
Alignment:
| Q |
157 |
tgatacacactttcacaaattaattaattcaaatggcttcctcaacaaacaaacatacaaaaactaattcaaacggtaacttggcttgtcaaaacgggct |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49523325 |
tgatacacactttcacaaattaattaattcaaatggcttcctcaacaaacaaacatacaaaaactaattcaaacggtaacttggcttgtcaaaacgggct |
49523226 |
T |
|
| Q |
257 |
tctagtccattccaagtaagctaaagcaagtgcttcttacaagtcaagaaggtaaatgattatggtttttgtcctccaaagagacttctctttcttgaaa |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49523225 |
tctagtccattccaagtaagctaaagcaagtgcttcttacaagtcaagaaggtaaatgattatggtttttgtcctccaaagagacttctctttcttgaaa |
49523126 |
T |
|
| Q |
357 |
caaaatattccctagattctttcttcatgtctctg |
391 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
49523125 |
caaaatattccctagattctttcttcatgtctctg |
49523091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 49523465 - 49523376
Alignment:
| Q |
22 |
tgacctatattacagaggataaaggcttattaactctaatttttatttctttaactc--ttgtttctttaagttggttaaaaagtttctt |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
49523465 |
tgacctatattacagaggataaaggcttattaactctaatttttatttctttaactcagttgtttctttaagttggttaaaaagtttctt |
49523376 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 49524411 - 49524366
Alignment:
| Q |
58 |
taatttttatttctttaactc--ttgtttctttaagttggttaaaa |
101 |
Q |
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| T |
49524411 |
taatttttatttctttaacttagttgtttctttaagttggttaaaa |
49524366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 19624028 - 19624065
Alignment:
| Q |
18 |
aaaatgacctatattacagaggataaaggcttattaac |
55 |
Q |
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|||||||||||||||||||||||||||| | ||||||| |
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| T |
19624028 |
aaaatgacctatattacagaggataaagacctattaac |
19624065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 26106 - 26070
Alignment:
| Q |
19 |
aaatgacctatattacagaggataaaggcttattaac |
55 |
Q |
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||||||||||||||||||||||||||| ||||||||| |
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| T |
26106 |
aaatgacctatattacagaggataaagacttattaac |
26070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 28461108 - 28461061
Alignment:
| Q |
17 |
caaaatgacctatattacagaggataaaggcttattaactctaatttt |
64 |
Q |
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|
||||| |||||||||||||| || ||||||||||||||| |||||||| |
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| T |
28461108 |
caaaaggacctatattacagggggtaaaggcttattaaccctaatttt |
28461061 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 25926926 - 25926890
Alignment:
| Q |
19 |
aaatgacctatattacagaggataaaggcttattaac |
55 |
Q |
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||||||||||||||||||||||||||| | ||||||| |
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| T |
25926926 |
aaatgacctatattacagaggataaagacctattaac |
25926890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0450 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0450
Description:
Target: scaffold0450; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 8114 - 8164
Alignment:
| Q |
19 |
aaatgacctatattacagaggataaaggcttattaactctaatttttattt |
69 |
Q |
| |
|
|||||||||||||||||| || ||||| | ||||||| ||||||||||||| |
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| T |
8114 |
aaatgacctatattacagtgggtaaagacctattaaccctaatttttattt |
8164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 28410953 - 28410903
Alignment:
| Q |
18 |
aaaatgacctatattacagaggataaaggcttattaactctaatttttatt |
68 |
Q |
| |
|
||||||||||||||||||| |||||||| | ||||||| |||||| ||||| |
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| T |
28410953 |
aaaatgacctatattacaggggataaagacctattaaccctaattattatt |
28410903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 16305127 - 16305168
Alignment:
| Q |
18 |
aaaatgacctatattacagaggataaaggcttattaactcta |
59 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||||||||||| |
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| T |
16305127 |
aaaatgacctatattacagagggtaaagacctattaactcta |
16305168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 3525886 - 3525923
Alignment:
| Q |
18 |
aaaatgacctatattacagaggataaaggcttattaac |
55 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||| |
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| T |
3525886 |
aaaatgacctatattacagagggtaaagacttattaac |
3525923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0727 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0727
Description:
Target: scaffold0727; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 874 - 838
Alignment:
| Q |
19 |
aaatgacctatattacagaggataaaggcttattaac |
55 |
Q |
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|
||||||||||||||||||||||||||| | ||||||| |
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|
| T |
874 |
aaatgacctatattacagaggataaagacctattaac |
838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 31186707 - 31186659
Alignment:
| Q |
18 |
aaaatgacctatattacagaggataaaggcttattaactctaattttta |
66 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||||||| ||| |||||| |
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|
| T |
31186707 |
aaaatgacctatattacagagggtaaagacctattaaccctacttttta |
31186659 |
T |
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