View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_low_3 (Length: 821)
Name: NF14376_low_3
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_low_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 751; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 751; E-Value: 0
Query Start/End: Original strand, 27 - 821
Target Start/End: Complemental strand, 42144819 - 42144026
Alignment:
| Q |
27 |
tacaccaaagaccaagtggtttaattaatattgtgtagtagtacaatagttacacagattacattacagtccccatgtgtatatgattttcaaccagata |
126 |
Q |
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| T |
42144819 |
tacaccaaagaccaagtggtttaattaatattgtgtagtagtacaatagttacacagattacattacagtccccatgtgtatatgattttcaaccagatt |
42144720 |
T |
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| Q |
127 |
tcagtgcagttgtgcagaattgtctgcaaaaaattacgtaattgtctttggcgttactctcatattcattccattagagagggggtccctcatagtttct |
226 |
Q |
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| T |
42144719 |
tcagtgcagttgtgcagaattgtctgcaaaaaattacgtaattgtctttggcgttactctcatattcattccattagagagggggtccctcatagtttct |
42144620 |
T |
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| Q |
227 |
ttgttgaccataggtaaattcagtactatgtaaaatattcagaatgaaaaaatcatgcatgaaattggaaataatattttacagataattaacaaattga |
326 |
Q |
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| T |
42144619 |
t-gttgaccataggtgaattcagtactatgtaatatattcagaatgaaaaaatcatgcatgaaattggaaataatattttacagataattaacaaattga |
42144521 |
T |
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| Q |
327 |
caagactattagattatgttagaacaaaatataaaacacatactacttgttgtaatgtaacacctaaaaggttaattaaaagcccaagttacacttttca |
426 |
Q |
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| T |
42144520 |
caagactattagattatgttagaacaaaatataaaacacatactacttgttgtaatgtaacacctaaaaggttaattaaaagcccaagttacacttttca |
42144421 |
T |
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| Q |
427 |
taatcaaattaaaaaactaagtactagacccaaaatcataaaaatccaccagaaacaactagtagcacagctagaaaatcccatagaggttatgaaattg |
526 |
Q |
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| T |
42144420 |
taatcaaattaaaaaactaagtactagacccaaaatcataaaaatccaccagaaacaactagtagcacagctagaaaatcccatagaggttatgaaattg |
42144321 |
T |
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| Q |
527 |
gaattatggttgatatcaccattgatcacttcagttttagcatttgattttaccaaatgaatctcctcttggtgacatggttttactccataaggaacat |
626 |
Q |
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| T |
42144320 |
gaattatggttgatatcaccattgatcacttcagttttagcatttgattttaccaaatgaatctcctcttggtgacatggttttactccataaggaacat |
42144221 |
T |
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| Q |
627 |
tgtttgttgacattaattcaactggatagcaaagtttaggattactccaagccccaaaacgtcttcccaatttaccaaaaaacccttttgaaaattgaat |
726 |
Q |
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| T |
42144220 |
tgtttgttgacattaattcaaatggatagcaaagtttaggattactccaagccccaaaacgtcttcccaatttaccaaaaaacccttttgaaaattgaat |
42144121 |
T |
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| Q |
727 |
ctcacctttaagattatttccacttaagtaaagtgcattgcgagaaggaagtgtttctcgctttggggctcagttacctgtaatgttgttatcac |
821 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| | | |||||||||||||||||||||||| |
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| T |
42144120 |
ctcacctttaagattatttccacttaagtaaagtgcattgagagaaggaagtgtttctagctttggtgataagttacctgtaatgttgttatcac |
42144026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 28377423 - 28377520
Alignment:
| Q |
51 |
ttaatattgtgtagtagtacaatagttacacagattacattacagtccccatgtgtatatgattttc-aaccagatatcagtgcagttgtgcagaatt |
147 |
Q |
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| T |
28377423 |
ttaatattgtgcactagtataatagttacacagattacattacagtccccatgtttatatgattgtcaaagttgttattagtgcagttgtgcagaatt |
28377520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 576 - 631
Target Start/End: Original strand, 28377519 - 28377574
Alignment:
| Q |
576 |
ttaccaaatgaatctcctcttggtgacatggttttactccataaggaacattgttt |
631 |
Q |
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| T |
28377519 |
ttaccaaatgaatctcctcttggttacatggtgttgctcaatatggatcattgttt |
28377574 |
T |
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