View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14376_low_31 (Length: 384)

Name: NF14376_low_31
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14376_low_31
NF14376_low_31
[»] chr6 (3 HSPs)
chr6 (32-369)||(6956138-6956475)
chr6 (32-233)||(23059185-23059390)
chr6 (55-132)||(13647398-13647475)
[»] chr7 (3 HSPs)
chr7 (32-368)||(21976207-21976546)
chr7 (57-168)||(43428005-43428116)
chr7 (314-357)||(43427813-43427858)
[»] chr5 (9 HSPs)
chr5 (32-371)||(14830094-14830424)
chr5 (32-218)||(28739674-28739863)
chr5 (24-168)||(985104-985250)
chr5 (66-156)||(26414461-26414551)
chr5 (55-148)||(21175539-21175632)
chr5 (314-363)||(984908-984958)
chr5 (49-104)||(14316958-14317013)
chr5 (314-363)||(26414665-26414715)
chr5 (55-132)||(4306905-4306982)
[»] chr4 (5 HSPs)
chr4 (63-335)||(18923082-18923348)
chr4 (55-168)||(44475140-44475253)
chr4 (32-86)||(2178971-2179026)
chr4 (314-356)||(2178059-2178101)
chr4 (314-363)||(44474944-44474994)
[»] chr8 (4 HSPs)
chr8 (32-371)||(37952695-37953037)
chr8 (32-155)||(10890583-10890708)
chr8 (32-86)||(5572546-5572602)
chr8 (55-116)||(5643261-5643322)
[»] chr2 (9 HSPs)
chr2 (32-218)||(12209900-12210088)
chr2 (32-182)||(42926558-42926710)
chr2 (260-368)||(12209799-12209902)
chr2 (51-181)||(35608312-35608444)
chr2 (235-367)||(42926397-42926526)
chr2 (25-166)||(9197234-9197377)
chr2 (314-356)||(9197525-9197567)
chr2 (307-353)||(35608564-35608610)
chr2 (32-84)||(32553689-32553743)
[»] chr1 (7 HSPs)
chr1 (32-161)||(48975727-48975858)
chr1 (55-156)||(43535589-43535690)
chr1 (54-168)||(32241052-32241166)
chr1 (314-355)||(52456290-52456331)
chr1 (54-104)||(23999775-23999825)
chr1 (314-363)||(32240762-32240812)
chr1 (314-355)||(43535836-43535877)
[»] chr3 (4 HSPs)
chr3 (55-178)||(9702064-9702187)
chr3 (55-168)||(49137954-49138067)
chr3 (314-363)||(49138213-49138263)
chr3 (55-132)||(21434203-21434280)
[»] scaffold0057 (1 HSPs)
scaffold0057 (70-132)||(63857-63919)


Alignment Details
Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 32 - 369
Target Start/End: Complemental strand, 6956475 - 6956138
Alignment:
Q  32 tggcggatcttggaacattttatgggg--tgccagaattgtatgaaatatatattaaactgtgtgaaagaaatatcaatattgttaattggtctagtggt 129  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| || ||||||||||  | |||||||||||||||| ||    
T  6956475 tggcggatcttggaacattttatggggggtgccagaattgtatgaaatatatattaaactgtgagagagaaatatcataactgttaattggtctagtagt 6956376  T
Q  130 ttattttgcttgattgcagagtaggggatgccggttcaattccacataggagcnnnnnnnngaacaaaatagtaaaaatataac-----------agaaa 218  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||        |||||||||||||||||||||||           |||||    
T  6956375 ttattttgcttgattgcagagtaggggatgccggtttgattccacataggagcttttttctgaacaaaatagtaaaaatataacaaaaatataaaagaaa 6956276  T
Q  219 gaggatgggagggtcagggtcgaacctgcgacctacacaataaaaactaacatcatttccactgcaccaactacgtagttgtgttataatacaagtatgc 318  Q
    ||||||||||||||||      |||| ||||||||||||| |||||||||| ||||||| ||||| |||||| |  || ||||     ||||||||||||    
T  6956275 gaggatgggagggtca------aacccgcgacctacacaagaaaaactaacgtcatttctactgcgccaactgcacagctgtg-----atacaagtatgc 6956187  T
Q  319 ctaatctaatatatatagaaaagttgggggtaccatggctcctgcaggtcc 369  Q
    ||||||||  ||||||||||||||||||||||||||||| |||||||||||    
T  6956186 ctaatcta--atatatagaaaagttgggggtaccatggcacctgcaggtcc 6956138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 32 - 233
Target Start/End: Original strand, 23059185 - 23059390
Alignment:
Q  32 tggcggatcttggaacattttatgggg--tgccagaattgtatgaaatatatattaaactgtgtgaaagaaatatcaatattgttaattggtctagtggt 129  Q
    ||||||||||||||| ||| |||||||  |||||||||||||||||||||||||||||||||||||  ||| |||||  | |||||| ||||| || |||    
T  23059185 tggcggatcttggaatattatatggggggtgccagaattgtatgaaatatatattaaactgtgtgagggaattatcataactgttaactggtccagcggt 23059284  T
Q  130 ttattttgcttgattgcagagtaggggatgccggttcaattccacatagg--agcnnnnnnnngaacaaaatagtaaaaatataacagaaagaggatggg 227  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||             |||||||||||||||||||||| |||||||||||||     
T  23059285 ttattttgcttgattgcagagtaggggatgccggttcgaatccacataggtttttttttttttgaacaaaatagtaaaaatataatagaaagaggatgga 23059384  T
Q  228 agggtc 233  Q
    ||||||    
T  23059385 agggtc 23059390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 13647475 - 13647398
Alignment:
Q  55 ggggtgccagaattgtatgaaatatatattaaactgtgtgaaagaaatatcaatattgttaattggtctagtggttta 132  Q
    ||||| ||| |||| ||||||||||||||||| |||| ||||| | ||||||| | |||||| || | ||||||||||    
T  13647475 ggggtaccaaaattctatgaaatatatattaagctgtttgaaaaatatatcaaaaatgttaactgctgtagtggttta 13647398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 32 - 368
Target Start/End: Complemental strand, 21976546 - 21976207
Alignment:
Q  32 tggcggatcttggaacattttatgggg--tgccagaattgtatgaaatatatattaaactgtgtgaaagaaatatcaatattgttaattggtctagtggt 129  Q
    ||||||||||||||| |||||||||||  ||||| ||||||||||||||||||||||||||||||| |||||||| |  | |||||||||||| ||||||    
T  21976546 tggcggatcttggaatattttatggggggtgccataattgtatgaaatatatattaaactgtgtgagagaaatattataactgttaattggtccagtggt 21976447  T
Q  130 ttattttgcttgattgcagagtaggggatgccggttcaattccacataggagcnnnnnnnngaacaaaatagtaaaaatataac------------agaa 217  Q
    ||||||||||| |||||| ||||| |||||||||||| | |||||||||||||         ||||||||||||||||||||||            ||||    
T  21976446 ttattttgctttattgcaaagtagaggatgccggttcgaatccacataggagctttttttttaacaaaatagtaaaaatataacagaaatataaaaagaa 21976347  T
Q  218 agaggatgggagggtcagggtcgaacctgcgacctacacaataaaaactaacatcatttccactgcaccaactacgtagttgtgttataatacaagtatg 317  Q
    ||| |||||||||||||      |||| ||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||     |||||| ||||    
T  21976346 agaagatgggagggtca------aacccgcgacctacacaagaaaaactaacatcacttccactgcgccaactacgtagttgtg-----atacaaatatg 21976258  T
Q  318 cctaatctaatatatatagaaaagttgggggtaccatggctcctgcaggtc 368  Q
    |||||||||||||||||||| ||||||||||||||||||| |||| |||||    
T  21976257 cctaatctaatatatatagagaagttgggggtaccatggcacctgtaggtc 21976207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 57 - 168
Target Start/End: Complemental strand, 43428116 - 43428005
Alignment:
Q  57 ggtgccagaattgtatgaaatatatattaaactgtgtgaaagaaatatcaatattgttaattggtctagtggtttattttgcttgattgcagagtagggg 156  Q
    |||||||| |||||||||||||||| |||||||||| |||  || |||||  |||||||| ||||| ||||||||||||||||||||||||| |||||||    
T  43428116 ggtgccagtattgtatgaaatatattttaaactgtgcgaagaaagtatcataattgttaactggtccagtggtttattttgcttgattgcagggtagggg 43428017  T
Q  157 atgccggttcaa 168  Q
     ||| |||||||    
T  43428016 gtgcgggttcaa 43428005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 357
Target Start/End: Complemental strand, 43427858 - 43427813
Alignment:
Q  314 tatgcctaatctaatatatata--gaaaagttgggggtaccatggc 357  Q
    ||||||||||||||||||||||  ||||| ||||||||||||||||    
T  43427858 tatgcctaatctaatatatatatagaaaacttgggggtaccatggc 43427813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 32 - 371
Target Start/End: Original strand, 14830094 - 14830424
Alignment:
Q  32 tggcggatcttggaacattttatgggg-tgccagaattgtatgaaatatatattaaactgtgtgaaagaaatatcaatattgttaattggtctagtggtt 130  Q
    |||||||| |||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||  | |||||| ||||| |||||||    
T  14830094 tggcggatgttggaatattttatgggggtgccggaattgtatgaaatatatattaaactgtgtgaaggaaatatcataactgttaactggtccagtggtt 14830193  T
Q  131 tattttgcttgattgcagagtaggggatgccggttcaattccacataggagc-nnnnnnnngaacaaaatagtaaaaatataacagaaagaggatgggag 229  Q
    |||||||||||||||||||||||| |||||||||||   |||||||| ||||         |||||||||||||||||||||||||||||||||||| ||    
T  14830194 tattttgcttgattgcagagtaggagatgccggttcgtatccacatacgagctttttttttgaacaaaatagtaaaaatataacagaaagaggatggaag 14830293  T
Q  230 ggtcagggtcgaacctgcgacctacacaataaaaactaacatcatttccactgcaccaactacgtagttgtgttataatacaagtatgcctaatctaata 329  Q
    |||||      |||  ||||||||  ||| |||||| | |||||||||||| || |||||| | ||||||||     |||||| ||||||||||||||||    
T  14830294 ggtca------aactcgcgacctatgcaagaaaaacaagcatcatttccaccgcgccaactgcatagttgtg-----atacaattatgcctaatctaata 14830382  T
Q  330 tatatagaaaagttgggggtaccatggctcctgcaggtccct 371  Q
    ||| | |||||||||||||||||||||| |||||||||||||    
T  14830383 tatgtggaaaagttgggggtaccatggcacctgcaggtccct 14830424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 32 - 218
Target Start/End: Original strand, 28739674 - 28739863
Alignment:
Q  32 tggcggatcttggaacattttatgg--ggtgccagaattgtatgaaatatatattaaactgtgtgaaagaaatatcaatattgttaattggtctagtggt 129  Q
    ||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||| | |||||||||  | |||||| ||||| | ||||    
T  28739674 tggcggatcttggaatattttatggagggtgccagaattgtatgaaatatatattaaactgtgtggaggaaatatcataactgttaactggtccaatggt 28739773  T
Q  130 ttattttgcttgattgcagagta-ggggatgccggttcaattccacataggagcnnnnnnnngaacaaaatagtaaaaatataacagaaa 218  Q
    |||||||||||||||| || ||| |||||||||||||| | ||||| |||||||        || |||||||||||||||||||||||||    
T  28739774 ttattttgcttgattgtagtgtatggggatgccggttcgaatccacttaggagcctttttttgagcaaaatagtaaaaatataacagaaa 28739863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 24 - 168
Target Start/End: Complemental strand, 985250 - 985104
Alignment:
Q  24 atatccactggcggatcttggaacattttat--ggggtgccagaattgtatgaaatatatattaaactgtgtgaaagaaatatcaatattgttaattggt 121  Q
    ||||||| |||||||||||| || | ||| |  |||||||||| |||||||||||||||| ||||||| ||||||  || |||||  |||||||| ||||    
T  985250 atatccagtggcggatcttgaaaaaatttcttgggggtgccagtattgtatgaaatatattttaaactatgtgaagaaagtatcataattgttaactggt 985151  T
Q  122 ctagtggtttattttgcttgattgcagagtaggggatgccggttcaa 168  Q
    | ||||||||||||||||||||||||| ||||||| ||| |||||||    
T  985150 ccagtggtttattttgcttgattgcagggtagggggtgcgggttcaa 985104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 66 - 156
Target Start/End: Original strand, 26414461 - 26414551
Alignment:
Q  66 attgtatgaaatatatattaaactgtgtgaaagaaatatcaatattgttaattggtctagtggtttattttgcttgattgcagagtagggg 156  Q
    |||||||||||||||||| ||| ||| |||| |||||||||  |||||||| ||||| |||||||||||||||||||||||||||||||||    
T  26414461 attgtatgaaatatatatcaaattgtttgaaggaaatatcataattgttaactggtccagtggtttattttgcttgattgcagagtagggg 26414551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 55 - 148
Target Start/End: Original strand, 21175539 - 21175632
Alignment:
Q  55 ggggtgccagaattgtatgaaatatatattaaactgtgtgaaagaaatatcaatattgttaattggtctagtggtttattttgcttgattgcag 148  Q
    |||||| ||| |||||||||||||||| ||||||||||||||  || |||||  |||||||| | ||| |||||||||||||||||||||||||    
T  21175539 ggggtgtcagtattgtatgaaatatattttaaactgtgtgaagaaagtatcataattgttaacttgtccagtggtttattttgcttgattgcag 21175632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 984958 - 984908
Alignment:
Q  314 tatgcctaatctaatatatatagaaaagtt-gggggtaccatggctcctgc 363  Q
    ||||||||||||||||||||||||||| || |||||||||||||| |||||    
T  984958 tatgcctaatctaatatatatagaaaacttggggggtaccatggcacctgc 984908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 14317013 - 14316958
Alignment:
Q  49 ttttatggggtgccagaattgtatgaaatatatattaaactgtgtgaaagaaatat 104  Q
    |||| |||||||||| |||| ||||||||||||||||| |||| ||||||| ||||    
T  14317013 ttttttggggtgccaaaattctatgaaatatatattaagctgtttgaaagatatat 14316958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 26414665 - 26414715
Alignment:
Q  314 tatgcctaatctaatatatatagaaaagtt-gggggtaccatggctcctgc 363  Q
    |||||||||| |||||||||||||||| || |||||||||||||| |||||    
T  26414665 tatgcctaatttaatatatatagaaaacttggggggtaccatggcacctgc 26414715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 4306905 - 4306982
Alignment:
Q  55 ggggtgccagaattgtatgaaatatatattaaactgtgtgaaagaaatatcaatattgttaattggtctagtggttta 132  Q
    ||||| ||| |||| |||||||||||||||||||||| |||||||   ||||| | |||||| || | ||||||||||    
T  4306905 ggggtaccaaaattctatgaaatatatattaaactgtttgaaagattaatcaaaaatgttaactgctgtagtggttta 4306982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 63 - 335
Target Start/End: Complemental strand, 18923348 - 18923082
Alignment:
Q  63 agaattgtatgaaatatatattaaactgtgtgaaagaaatatcaatattgttaattggtctagtggtttattttgcttgattgcagagtaggggatgccg 162  Q
    ||||||||||||||||||||||||||||||||| ||||||||||  | |||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  18923348 agaattgtatgaaatatatattaaactgtgtgagagaaatatcataaatgttaactggtccagtggtttattttgcttgattgcagagtaggggatgccg 18923249  T
Q  163 gttcaattccacataggag-----cnnnnnnnngaacaaaatagtaaaaatataacagaaagaggatgggagggtcagggtcgaacctgcgacctacaca 257  Q
    |||| ||||||||||||||     |         || |||||||||||||||||| ||||||||||||||      ||||||||||| || |||||||||    
T  18923248 gttcgattccacataggagtttttctttaaacaaaaaaaaatagtaaaaatataaaagaaagaggatggg------agggtcgaaccagcaacctacaca 18923155  T
Q  258 ataaaaactaacatcatttccactgcaccaactacgtagttgtgttataatacaagtatgcctaatctaatatatata 335  Q
    | |||||||||||||||||||| | | |||||||| ||||||||     |||||||||||||||||||||||||||||    
T  18923154 agaaaaactaacatcatttccattacgccaactacatagttgtg-----atacaagtatgcctaatctaatatatata 18923082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 55 - 168
Target Start/End: Complemental strand, 44475253 - 44475140
Alignment:
Q  55 ggggtgccagaattgtatgaaatatatattaaactgtgtgaaagaaatatcaatattgttaattggtctagtggtttattttgcttgattgcagagtagg 154  Q
    |||||||||| ||| |||||||||||| ||||||||||||||  || |||||  |||||||| ||||| ||||||||||||||||||||||||| |||||    
T  44475253 ggggtgccagtattatatgaaatatattttaaactgtgtgaagaaagtatcataattgttaactggtccagtggtttattttgcttgattgcagggtagg 44475154  T
Q  155 ggatgccggttcaa 168  Q
    || ||| |||||||    
T  44475153 gggtgcgggttcaa 44475140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 2179026 - 2178971
Alignment:
Q  32 tggcggatcttggaacattttat-ggggtgccagaattgtatgaaatatatattaa 86  Q
    |||||||||||| || ||||| | ||||||||||||||||||||||||||||||||    
T  2179026 tggcggatcttgaaatatttttttggggtgccagaattgtatgaaatatatattaa 2178971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 356
Target Start/End: Original strand, 2178059 - 2178101
Alignment:
Q  314 tatgcctaatctaatatatatagaaaagttgggggtaccatgg 356  Q
    |||||||||||||||||||||||||||  ||||||||||||||    
T  2178059 tatgcctaatctaatatatatagaaaatctgggggtaccatgg 2178101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 44474994 - 44474944
Alignment:
Q  314 tatgcctaatctaatatatatagaaaagttggggg-taccatggctcctgc 363  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||| |||||    
T  44474994 tatgcctaatctaatatatatagaaaacttgggggttaccatggcacctgc 44474944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 32 - 371
Target Start/End: Complemental strand, 37953037 - 37952695
Alignment:
Q  32 tggcggatcttggaacattttatgggg--tgccagaattgtatgaaatatatattaaactgtgtgaaagaaatatcaatattgttaattggtctagtggt 129  Q
    ||||||||||| ||| ||||| |||||  ||||| ||||||||||||||||||||||||||||||||  ||||||||  |  ||||| ||||| ||||||    
T  37953037 tggcggatcttagaatattttttggggggtgccaaaattgtatgaaatatatattaaactgtgtgaagtaaatatcataacagttaactggtccagtggt 37952938  T
Q  130 ttattttgcttgattgcagagtaggggatgccggttcaattccacataggag-cnnnnnnnngaacaaaatagtaaaaatataacagaaagaggatgg-- 226  Q
    | ||||||||||||  |||||| || ||||||||||  | ||||||||||||          |||||||||||||||||||||||||||| |  |  |      
T  37952937 tcattttgcttgatcccagagtgggagatgccggtttgaatccacataggagatttttttttgaacaaaatagtaaaaatataacagaaatataaaagaa 37952838  T
Q  227 -gagg--gtcagggtcgaacctgcgacctacacaataaaaactaacatcatttccactgcaccaactacgtagttgtgttataatacaagtatgcctaat 323  Q
     ||||  |  ||||||||||| ||||||||| ||| |||| | ||||||||||||||||| |||||| | |||||| |     |||||| ||||||||||    
T  37952837 agaggatggaagggtcgaacccgcgacctactcaagaaaagcaaacatcatttccactgcgccaactgcatagttgag-----atacaattatgcctaat 37952743  T
Q  324 ctaatatatatagaaaagttgggggtaccatggctcctgcaggtccct 371  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||    
T  37952742 ctaatatatatagaaaagttgggggtaccatggcacatgcaggtccct 37952695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 155
Target Start/End: Complemental strand, 10890708 - 10890583
Alignment:
Q  32 tggcggatcttggaacattttat--ggggtgccagaattgtatgaaatatatattaaactgtgtgaa-agaaatatcaatattgttaattggtctagtgg 128  Q
    |||||||||||| || ||||| |  ||||||||||||||||||||||||||||||||  ||| | || ||||  || |  |||||||| ||||| |||||    
T  10890708 tggcggatcttgaaatattttcttgggggtgccagaattgtatgaaatatatattaagttgtttcaagagaaggat-ataattgttaactggtccagtgg 10890610  T
Q  129 tttattttgcttgattgcagagtaggg 155  Q
    ||| |||||||||| ||||||| ||||    
T  10890609 tttgttttgcttgaatgcagagcaggg 10890583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 5572546 - 5572602
Alignment:
Q  32 tggcggatcttggaacattttat--ggggtgccagaattgtatgaaatatatattaa 86  Q
    |||||||||||| || |||||||  ||||||||| ||||||||||||||||||||||    
T  5572546 tggcggatcttgaaatattttattgggggtgccaaaattgtatgaaatatatattaa 5572602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 5643261 - 5643322
Alignment:
Q  55 ggggtgccagaattgtatgaaatatatattaaactgtgtgaaagaaatatcaatattgttaa 116  Q
    ||||| ||| |||| ||||||||||||||||| |||| ||||||| ||||||| | ||||||    
T  5643261 ggggtaccaaaattctatgaaatatatattaagctgtttgaaagatatatcaaaaatgttaa 5643322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 32 - 218
Target Start/End: Complemental strand, 12210088 - 12209900
Alignment:
Q  32 tggcggatcttggaacattttatggggtgccagaattgtatgaaatatatattaaactgtgtgaaagaaatatcaatattgttaattggtctagtggttt 131  Q
    ||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||| |  | |||| | ||||| | ||||||    
T  12210088 tggcggatcttggaatattttatggggtggcagaattgtttgaaatatatattaaactgtgtgtaagaaatattataactgttgactggtccaatggttt 12209989  T
Q  132 attttgcttgattgcagagtaggggatgccggttcaattccacatag--gagcnnnnnnnngaacaaaatagtaaaaatataacagaaa 218  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||  ||||        ||||||||||||||||||||||||||||    
T  12209988 attttgcttgattgcagagtaggggatgccggttcgaatccacataggagagcttttttttgaacaaaatagtaaaaatataacagaaa 12209900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 32 - 182
Target Start/End: Complemental strand, 42926710 - 42926558
Alignment:
Q  32 tggcggatcttggaacattttatgggg--tgccagaattgtatgaaatatatattaaactgtgtgaaagaaatatcaatattgttaattggtctagtggt 129  Q
    ||||||||||||||| |||||||||||  |||||||| ||  ||||||||||||||||||||||||| |||||||||  | |||||| ||||| ||||||    
T  42926710 tggcggatcttggaatattttatggggggtgccagaaatgattgaaatatatattaaactgtgtgaaggaaatatcataactgttaactggtccagtggt 42926611  T
Q  130 ttattttgcttgattgcagagtaggggatgccggttcaattccacataggagc 182  Q
    |||| |||||||||||| |||| |||| |||| |||||| ||| |||||||||    
T  42926610 ttatattgcttgattgcggagtggggggtgccagttcaaatcctcataggagc 42926558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 12209902 - 12209799
Alignment:
Q  260 aaaaactaacatcatttccactgcaccaactacgtagttgtgttataatacaagtatgcctaatctaatatatatagaaaagttgggggtaccatggctc 359  Q
    |||||||||| |||||||||||||||||||| ||||||||||     |||||||||||||||||| ||||||||||||||||||||||||| ||||||      
T  12209902 aaaaactaacgtcatttccactgcaccaactgcgtagttgtg-----atacaagtatgcctaatcgaatatatatagaaaagttgggggtatcatggcat 12209808  T
Q  360 ctgcaggtc 368  Q
    |||||||||    
T  12209807 ctgcaggtc 12209799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 51 - 181
Target Start/End: Original strand, 35608312 - 35608444
Alignment:
Q  51 ttatgggg-tgccagaatt-gtatgaaatatatattaaactgtgtgaaagaaatatcaatattgttaattggtctagtggtttattttgcttgattgcag 148  Q
    |||||||| |||||||||| | ||||||||||||||||||||||||||  |||||| |  | |||||||||||  ||||||| |||||||||||||||||    
T  35608312 ttatggggatgccagaatttgcatgaaatatatattaaactgtgtgaagtaaatattataactgttaattggttcagtggttcattttgcttgattgcag 35608411  T
Q  149 agtaggggatgccggttcaattccacataggag 181  Q
    ||||||||||| |||||  | ||||||||||||    
T  35608412 agtaggggatgtcggtttgaatccacataggag 35608444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 235 - 367
Target Start/End: Complemental strand, 42926526 - 42926397
Alignment:
Q  235 gggtcgaacctgcgacctacacaataaaaactaacatcatttccactgcaccaactacgtagttgtgttataatacaagtatgcctaatctaatatatat 334  Q
    |||||||||| || |||||| ||| | |||| |||| |||||||||||| |||||||||||||||||     |||||| |||||||||||||||||||||    
T  42926526 gggtcgaacccgcaacctacgcaagagaaacaaacaacatttccactgcgccaactacgtagttgtg-----atacaattatgcctaatctaatatatat 42926432  T
Q  335 agaaaagtt--gggggtaccatggctcctgcaggt 367  Q
    ||||| |||  |||||||||||||| |||||||||    
T  42926431 agaaatgttgggggggtaccatggcacctgcaggt 42926397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 166
Target Start/End: Original strand, 9197234 - 9197377
Alignment:
Q  25 tatccactggcggatcttggaacattttat--ggggtgccagaattgtatgaaatatatattaaactgtgtgaaagaaatatcaatattgttaattggtc 122  Q
    |||||| |||||||||||| || ||||| |  |||||||||| |||||||||||||||| ||||||| ||||||  || |||||  |||||||| | |||    
T  9197234 tatccagtggcggatcttgaaaaattttcttgggggtgccagtattgtatgaaatatattttaaactatgtgaagaaagtatcataattgttaacttgtc 9197333  T
Q  123 tagtggtttattttgcttgattgcagagtaggggatgccggttc 166  Q
      ||| |||||||||||||||||||| ||||||| ||| |||||    
T  9197334 cggtgctttattttgcttgattgcagggtagggggtgcgggttc 9197377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 314 - 356
Target Start/End: Original strand, 9197525 - 9197567
Alignment:
Q  314 tatgcctaatctaatatatatagaaaagttgggggtaccatgg 356  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  9197525 tatgcctaatctaatatatatagaaaacttgggggtaccatgg 9197567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 353
Target Start/End: Original strand, 35608564 - 35608610
Alignment:
Q  307 atacaagtatgcctaatctaatatatatagaaaagttgggggtacca 353  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||    
T  35608564 atacaattatgcctaatctaatatatatagaaaatttgggggtacca 35608610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 32553689 - 32553743
Alignment:
Q  32 tggcggatcttggaacattttat--ggggtgccagaattgtatgaaatatatatt 84  Q
    |||||||||||| || ||||| |  ||||||||||||||||||||||||||||||    
T  32553689 tggcggatcttgaaatattttcttgggggtgccagaattgtatgaaatatatatt 32553743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 32 - 161
Target Start/End: Original strand, 48975727 - 48975858
Alignment:
Q  32 tggcggatcttggaacattttatg--gggtgccagaattgtatgaaatatatattaaactgtgtgaaagaaatatcaatattgttaattggtctagtggt 129  Q
    ||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||| ||||||||||||    
T  48975727 tggcggatcttggaatattttatgcggggtgccagaattgtatgaaatatatattaaactgtgtgaaagaaatatcataactgttaactggtctagtggt 48975826  T
Q  130 ttattttgcttgattgcagagtaggggatgcc 161  Q
    |||||||||||||| |||||||||||||||||    
T  48975827 ttattttgcttgatagcagagtaggggatgcc 48975858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 55 - 156
Target Start/End: Original strand, 43535589 - 43535690
Alignment:
Q  55 ggggtgccagaattgtatgaaatatatattaaactgtgtgaaagaaatatcaatattgttaattggtctagtggtttattttgcttgattgcagagtagg 154  Q
    |||||||||| |||||||||||||||||| ||||||| ||||||||||||||  |||||||| || || |||| ||||||||||||||||||||||||||    
T  43535589 ggggtgccagtattgtatgaaatatatatgaaactgtttgaaagaaatatcataattgttaactgatccagtgatttattttgcttgattgcagagtagg 43535688  T
Q  155 gg 156  Q
    ||    
T  43535689 gg 43535690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 54 - 168
Target Start/End: Complemental strand, 32241166 - 32241052
Alignment:
Q  54 tggggtgccagaattgtatgaaatatatattaaactgtgtgaaagaaatatcaatattgttaattggtctagtggtttattttgcttgattgcagagtag 153  Q
    ||||||||||| |||||||||||||||| ||||||||||||||  || |||||  |||||||| || || ||||||||||||||||||||||||| ||||    
T  32241166 tggggtgccagtattgtatgaaatatattttaaactgtgtgaagaaagtatcataattgttaactgatccagtggtttattttgcttgattgcagggtag 32241067  T
Q  154 gggatgccggttcaa 168  Q
    ||| ||| |||||||    
T  32241066 ggggtgcgggttcaa 32241052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 355
Target Start/End: Original strand, 52456290 - 52456331
Alignment:
Q  314 tatgcctaatctaatatatatagaaaagttgggggtaccatg 355  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  52456290 tatgcctaatctaatatatatagaaaacttgggggtaccatg 52456331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 23999825 - 23999775
Alignment:
Q  54 tggggtgccagaattgtatgaaatatatattaaactgtgtgaaagaaatat 104  Q
    |||||||||||||||||| ||||||||||||||| | |||||| |||||||    
T  23999825 tggggtgccagaattgtaggaaatatatattaaattatgtgaaggaaatat 23999775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 32240812 - 32240762
Alignment:
Q  314 tatgcctaatctaatatatatagaaaagtt-gggggtaccatggctcctgc 363  Q
    ||||||||||||||||||||||||||| || |||||||||||||| |||||    
T  32240812 tatgcctaatctaatatatatagaaaacttggggggtaccatggcacctgc 32240762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 355
Target Start/End: Original strand, 43535836 - 43535877
Alignment:
Q  314 tatgcctaatctaatatatatagaaaagttgggggtaccatg 355  Q
    ||||||||||||||||||||||||||| || |||||||||||    
T  43535836 tatgcctaatctaatatatatagaaaactttggggtaccatg 43535877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 55 - 178
Target Start/End: Complemental strand, 9702187 - 9702064
Alignment:
Q  55 ggggtgccagaattgtatgaaatatatattaaactgtgtgaaagaaatatcaatattgttaattggtctagtggtttattttgcttgattgcagagtagg 154  Q
    ||||||| |||| |||||||||||||||||||| | |||||| |||||||||  |||||||| ||||| |||||||||||||||||||||||| |||| |    
T  9702187 ggggtgcgagaaatgtatgaaatatatattaaattttgtgaaggaaatatcacaattgttaactggtccagtggtttattttgcttgattgcaaagtacg 9702088  T
Q  155 ggatgccggttcaattccacatag 178  Q
    |||||| ||||||| |||||||||    
T  9702087 ggatgcgggttcaaatccacatag 9702064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 55 - 168
Target Start/End: Original strand, 49137954 - 49138067
Alignment:
Q  55 ggggtgccagaattgtatgaaatatatattaaactgtgtgaaagaaatatcaatattgttaattggtctagtggtttattttgcttgattgcagagtagg 154  Q
    |||||||||| |||||||||||||||| ||||||||||||||  || |||||  |||||||| ||||| ||||||||||||||||||||||||| |||||    
T  49137954 ggggtgccagtattgtatgaaatatattttaaactgtgtgaagaaagtatcataattgttaactggtccagtggtttattttgcttgattgcagggtagg 49138053  T
Q  155 ggatgccggttcaa 168  Q
    || ||| |||||||    
T  49138054 gggtgcgggttcaa 49138067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 49138213 - 49138263
Alignment:
Q  314 tatgcctaatctaatatatatagaaaagtt-gggggtaccatggctcctgc 363  Q
    ||||||||||||||||||||||||||| || |||||||||||||| |||||    
T  49138213 tatgcctaatctaatatatatagaaaacttggggggtaccatggcacctgc 49138263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 21434280 - 21434203
Alignment:
Q  55 ggggtgccagaattgtatgaaatatatattaaactgtgtgaaagaaatatcaatattgttaattggtctagtggttta 132  Q
    ||||| ||| |||| |||||||||||||||||||||| |||||||  |||||| | |||||| || | ||||||||||    
T  21434280 ggggtaccaaaattctatgaaatatatattaaactgtttgaaagatttatcaaaaatgttaactgctgtagtggttta 21434203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 63857 - 63919
Alignment:
Q  70 tatgaaatatatattaaactgtgtgaaagaaatatcaatattgttaattggtctagtggttta 132  Q
    ||||||||||||||||| |||| |||||||  |||||| | ||||||||| | ||||||||||    
T  63857 tatgaaatatatattaagctgtttgaaagatttatcaaaaatgttaattgttgtagtggttta 63919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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