View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_low_32 (Length: 380)
Name: NF14376_low_32
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 12163720 - 12164083
Alignment:
| Q |
1 |
acaaaacaaaattctgttcatacaatttgaatgtatgttgctgatctacttactaataatagtaactcagaaataaagataagaatgaactnnnnnnntc |
100 |
Q |
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| T |
12163720 |
acaaaacaaaattctcttcatacaatttgaatgtatgttgctgatccacttactaataatagtaactcagaaataaagataagaatgaactaaaaatatc |
12163819 |
T |
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| Q |
101 |
tcaacaaaacaatttaatgctcttattctatatttctgcctcaccttgcctataaataccaaacatttggtcacttcattttcatcaatcaatacttttc |
200 |
Q |
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| T |
12163820 |
tgaacaaaacaatttaatgctattattctat--ttctgcctcaccttgcctataaatacccaacatttggtcacttcattttcatcaatcaatacttttc |
12163917 |
T |
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| Q |
201 |
ctagatacatataagtttcatagagagtactttataaaaatgaattcaaaggcttttcttttcctagccatgctgttggcttccatccttcttatatgtg |
300 |
Q |
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| T |
12163918 |
ctagatacatataagtttcatagagagtactttataaaaatgaattcaaaggctttacttttcctagccatgctgttggctaccatccttcttatatgtg |
12164017 |
T |
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| Q |
301 |
cagagtctgcacccaaagacttggacaacaaagatggtaatactagttttgaacatttagtataat |
366 |
Q |
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| T |
12164018 |
cagagtctgcacccaaagacttggacaacaaagatggtaatactagttttgaacatttagtataat |
12164083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 212 - 366
Target Start/End: Original strand, 12149445 - 12149599
Alignment:
| Q |
212 |
taagtttcatagagagtactttataaaaatgaattcaaaggcttttcttttcctagccatgctgttggcttccatccttcttatatgtgcagagtctgca |
311 |
Q |
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| T |
12149445 |
taagtttcaaagtgagtacttcttgaaaatgaattccaaggcgttactttttctagccatgttgttggcttccatccttctcatttgtgcagagtctgca |
12149544 |
T |
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| Q |
312 |
cccaaagacttggacaacaaagatggtaatactagttttgaacatttagtataat |
366 |
Q |
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| T |
12149545 |
cccaaagacttggacaacaaagatggtaatactaattttttacatttagtataat |
12149599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 236 - 328
Target Start/End: Complemental strand, 12146340 - 12146248
Alignment:
| Q |
236 |
aaaaatgaattcaaaggcttttcttttcctagccatgctgttggcttccatccttcttatatgtgcagagtctgcacccaaagacttggacaa |
328 |
Q |
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| T |
12146340 |
aaaaatgaattccaaggctttactttttctagctatgttgttggcttccatccttctcagttctgctgagactgcacccaaagacttggacaa |
12146248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 12175238 - 12175301
Alignment:
| Q |
131 |
tatttctgcctcaccttgcctataaataccaaacatttggtcacttcattttcatcaatcaata |
194 |
Q |
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| T |
12175238 |
tatttcttcctcatcttgcctataaatacataactttcagtcacttcattttcatcgatcaata |
12175301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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