View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_low_33 (Length: 375)
Name: NF14376_low_33
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 12020710 - 12020360
Alignment:
| Q |
1 |
ccgatacattaaaatcatttgaaactcgatataaatagcaatgtatatagtatatggttatagaaaaaggaaataaatttgtgaataaataatgaaaatg |
100 |
Q |
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| T |
12020710 |
ccgatacgttaaaatcatttgaaactcgatataaatagcaatgtatat-------ggttatagaaaaaggaaataaatttgtgaataaataatgaaaatg |
12020618 |
T |
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| Q |
101 |
gaatttgagcttgccttggagttaatttgaagagaggggtgacgaataggttctttagaataatctgaaggacctgtgattcctggcattga-ctataat |
199 |
Q |
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| T |
12020617 |
gaatttgagcttgccttggagttaatttgaagagaggggtgacgaataggttctttagaataatctgaaggacctgtgattcctggcattgttctataat |
12020518 |
T |
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| Q |
200 |
gtttttcagatttgaagatggtggcaaataacaaccatagcttctgatttgtacatgaaatttataacatgtgccatgagtggaggatgacaatggtggg |
299 |
Q |
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| T |
12020517 |
gtttttcagatttgaagatggtggcaaataacaaccatagcttctgatttgtacatgaaatttataacatgtgccatgagtggaggatgacaatggtggg |
12020418 |
T |
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| Q |
300 |
tcccactcaaacatatatgatagacacgtggcgcatttgcattctgctgacatgttag |
357 |
Q |
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| T |
12020417 |
tcccactcaaacatatatgatagacacgtggcgcatttgcattctactgacatgttag |
12020360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 8474181 - 8474258
Alignment:
| Q |
114 |
ccttggagttaatttgaagagaggggtgacgaataggttctttagaataatctgaaggacctgtgattcctggcattg |
191 |
Q |
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|||||||||| ||||||||||| || |||||| |||||||| ||||||||||| || |||| | ||||||||||| |
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| T |
8474181 |
ccttggagttgatttgaagagaaggatgacgaggtggttctttggaataatctgatggtgctgttaatcctggcattg |
8474258 |
T |
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