View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14376_low_37 (Length: 357)

Name: NF14376_low_37
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14376_low_37
NF14376_low_37
[»] chr4 (4 HSPs)
chr4 (20-315)||(7433092-7433388)
chr4 (105-201)||(43968011-43968107)
chr4 (51-100)||(46550635-46550684)
chr4 (132-168)||(3067677-3067713)
[»] chr8 (1 HSPs)
chr8 (132-201)||(25267101-25267169)
[»] scaffold0192 (1 HSPs)
scaffold0192 (105-171)||(13388-13456)
[»] chr3 (5 HSPs)
chr3 (132-205)||(31229794-31229866)
chr3 (55-100)||(1994784-1994829)
chr3 (132-173)||(34730789-34730830)
chr3 (105-158)||(16053073-16053128)
chr3 (44-100)||(39170908-39170964)
[»] chr2 (1 HSPs)
chr2 (43-100)||(3870148-3870205)
[»] chr1 (2 HSPs)
chr1 (51-100)||(24241606-24241655)
chr1 (105-171)||(46298538-46298606)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 20 - 315
Target Start/End: Complemental strand, 7433388 - 7433092
Alignment:
Q  20 atcggatcatctttatcaatttccttctatatgt--gtgtgaccaaatcatatttccttggtcttgtgaccatattagaatttttcaattttaaattttt 117  Q
    |||| |||||||||||||||||||||||||||||  |||||||||||||||||||| || ||||||||| ||||||||||| |||| |||||||||||||    
T  7433388 atcgaatcatctttatcaatttccttctatatgtacgtgtgaccaaatcatatttctttagtcttgtgatcatattagaatctttcgattttaaattttt 7433289  T
Q  118 agaatataatctataatttccaacaaaatgtttctatctttattttcttaacttatgtttttgagggcacaaattaatatttcccatttttaattatata 217  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||  |||| ||||||| ||||||||||||||    
T  7433288 agaatataatccacaatttccaacaaaatgtttctatctttattttcataacttatgtttt-gagggcacaggttaacatttcccttttttaattatata 7433190  T
Q  218 taccaattttcttattacccttcttcctttatttgtcacattgctcctagctaccatttaaaatttttgaatttgtcacattgaccgtaaactgcata 315  Q
     ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7433189 caccaattttgttattacccttcttcctttatttgtcacattgctcctagctaccatttaaaatttttgaatttgtcatattgaccgtaaactgcata 7433092  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 105 - 201
Target Start/End: Original strand, 43968011 - 43968107
Alignment:
Q  105 attttaaatttttagaatat--aatctataatttccaacaaaatgtttctatctttattttcttaacttatgtttttgagggcacaaattaatatttcc 201  Q
    |||| |||||||||||||||  |||  | ||||| |||||||||||||||||||||  ||||||||||  ||| | |||||||||||||||| ||||||    
T  43968011 atttaaaatttttagaatattaaatgcacaattttcaacaaaatgtttctatctttggtttcttaact--tgtgtctgagggcacaaattaagatttcc 43968107  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 46550684 - 46550635
Alignment:
Q  51 tgtgtgtgaccaaatcatatttccttggtcttgtgaccatattagaattt 100  Q
    ||||||||||||||   | |||| ||||||||||||||||||||||||||    
T  46550684 tgtgtgtgaccaaacactttttctttggtcttgtgaccatattagaattt 46550635  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 3067677 - 3067713
Alignment:
Q  132 aatttccaacaaaatgtttctatctttattttcttaa 168  Q
    |||||||||||||||||||||||||||  ||||||||    
T  3067677 aatttccaacaaaatgtttctatctttggtttcttaa 3067713  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 25267101 - 25267169
Alignment:
Q  132 aatttccaacaaaatgtttctatctttattttcttaacttatgtttttgagggcacaaattaatatttcc 201  Q
    |||||||||||||||||||||||||||  ||||||||||||||  |||||||||| || |||| ||||||    
T  25267101 aatttccaacaaaatgtttctatctttggtttcttaacttatg-ctttgagggcagaagttaacatttcc 25267169  T

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Target: scaffold0192 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 13456 - 13388
Alignment:
Q  105 attttaaatttttagaatat--aatctataatttccaacaaaatgtttctatctttattttcttaactt 171  Q
    ||||||||||| ||||||||  |||  | |||||||||||||||||||||||||||  |||||||||||    
T  13456 attttaaatttctagaatattgaatgcacaatttccaacaaaatgtttctatctttgctttcttaactt 13388  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 31229794 - 31229866
Alignment:
Q  132 aatttccaacaaaatgtttctatctttattttcttaacttatgtttttgagggcacaaattaatatttcccatt 205  Q
    ||||||||| ||||||||||||| | || | ||||||||||||  ||| |||||||||||||| ||||||||||    
T  31229794 aatttccaataaaatgtttctatatgtaatctcttaacttatg-ctttaagggcacaaattaacatttcccatt 31229866  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 1994829 - 1994784
Alignment:
Q  55 tgtgaccaaatcatatttccttggtcttgtgaccatattagaattt 100  Q
    |||||||||||  |||||| |||||| |||||||||||||||||||    
T  1994829 tgtgaccaaatactatttctttggtcatgtgaccatattagaattt 1994784  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 34730789 - 34730830
Alignment:
Q  132 aatttccaacaaaatgtttctatctttattttcttaacttat 173  Q
    ||||||||||||||| ||| |||||||| |||||||||||||    
T  34730789 aatttccaacaaaatatttttatctttagtttcttaacttat 34730830  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 16053128 - 16053073
Alignment:
Q  105 attttaaatttttagaatat--aatctataatttccaacaaaatgtttctatcttt 158  Q
    ||||||||||| ||||||||  |||  | |||||||||||||||||||||||||||    
T  16053128 attttaaatttctagaatattgaatgcacaatttccaacaaaatgtttctatcttt 16053073  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 39170964 - 39170908
Alignment:
Q  44 ttctatatgtgtgtgaccaaatcatatttccttggtcttgtgaccatattagaattt 100  Q
    |||| ||||||||||||||||   |||||  ||| ||||||||||||||||||||||    
T  39170964 ttctttatgtgtgtgaccaaacattatttatttgatcttgtgaccatattagaattt 39170908  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 3870148 - 3870205
Alignment:
Q  43 cttctatatgtgtgtgaccaaatcatatttccttggtcttgtgaccatattagaattt 100  Q
    ||||| ||||||||||||||||   | |||| |||||| |||||||||||||||||||    
T  3870148 cttctttatgtgtgtgaccaaacactttttctttggtcctgtgaccatattagaattt 3870205  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 24241606 - 24241655
Alignment:
Q  51 tgtgtgtgaccaaatcatatttccttggtcttgtgaccatattagaattt 100  Q
    |||||||||||||||  | |||| |||||| |||||||||||||||||||    
T  24241606 tgtgtgtgaccaaatactttttctttggtcctgtgaccatattagaattt 24241655  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 46298606 - 46298538
Alignment:
Q  105 attttaaatttttagaatat--aatctataatttccaacaaaatgtttctatctttattttcttaactt 171  Q
    ||||||||||| || |||||  ||| || ||||||||||||||||||| |||||||  |||||||||||    
T  46298606 attttaaatttctataatattgaatatacaatttccaacaaaatgtttttatctttggtttcttaactt 46298538  T

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