View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_low_38 (Length: 353)
Name: NF14376_low_38
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 44882530 - 44882195
Alignment:
| Q |
1 |
cacgcgaacgtgtggttcgagtaaattaatgaaaataggtccaagacttgaatttagtggctcatcaatttatgtcatcattcaagagcattgcatttga |
100 |
Q |
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| T |
44882530 |
cacgcgaacgtgtggttcgagtaaattaatgaaaataggtccaaaacttgaatttagtggctcatcaatttatgtcatcattcaagagcattgcatttga |
44882431 |
T |
|
| Q |
101 |
tcacacttgatggttgtcagattgatgttcaaccaaactagtactgtgatttatatattgcaaactatttcatcactttaaaattacttttaataaatgg |
200 |
Q |
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| T |
44882430 |
tcacacttgatggttgtcagattgatgttcaaccaaactagtactgtgatttatatattgcgaactatttcatcactttaaaattacttttaataaatgg |
44882331 |
T |
|
| Q |
201 |
aaattgcaatagaacataatcaacatgacatagattaggtgctgtgtgccctgatattttcctaatggcatcaaaggaatctataaccgttcgtgcaaca |
300 |
Q |
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| T |
44882330 |
aaattgcaatagaacataatcaacatgacatagattgggtgctgtgtgccctgatattttcttaatagcatcaaaggaatctataaccgttcgttcaaca |
44882231 |
T |
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| Q |
301 |
tgccgaagaactcagttgtattatgaatgtataatt |
336 |
Q |
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| T |
44882230 |
tgctgaagaactcagttgtattatgaatgtataatt |
44882195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 8978527 - 8978603
Alignment:
| Q |
6 |
gaacgtgtggttcgagtaaattaatgaaaataggtccaagacttgaatttagtggctcatcaatttatgtcatcatt |
82 |
Q |
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| T |
8978527 |
gaacgtttggttcgagtaaattaatgaaaataggtccaaaactttaatttagcgactcatcaatttatgttatcatt |
8978603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 189 - 314
Target Start/End: Original strand, 8983937 - 8984060
Alignment:
| Q |
189 |
tttaataaatggaaattgcaatagaacataatcaacatgacatagattaggtgctgtgtgccctgatattttcctaatggcatcaaaggaatctataacc |
288 |
Q |
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||||| ||||| |||||||||||||||||||||||||| |||||||| || || | || |||| ||||||||||| ||||||||||||||||||| |
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| T |
8983937 |
tttaacaaatgaaaattgcaatagaacataatcaacataacatagat--ggggcactctgatctgaaattttcctaataacatcaaaggaatctataact |
8984034 |
T |
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| Q |
289 |
gttcgtgcaacatgccgaagaactca |
314 |
Q |
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|||| |||| |||||||||||||| |
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| T |
8984035 |
gttcctgcagggtgccgaagaactca |
8984060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 274 - 335
Target Start/End: Original strand, 8994894 - 8994955
Alignment:
| Q |
274 |
aaggaatctataaccgttcgtgcaacatgccgaagaactcagttgtattatgaatgtataat |
335 |
Q |
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| T |
8994894 |
aaggaatctataaccattcgtgcatcatgccgaagaactcagttgcattatgtatgtataat |
8994955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 8983766 - 8983889
Alignment:
| Q |
28 |
aatgaaaataggtccaagac-ttgaatttagtggctcatcaatttatgtcatcattcaagagcattgcatttgatcacacttgatggttgtcagattgat |
126 |
Q |
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|||||||||||| |||| || || ||||||||| |||||||||| | |||| ||||||||||||||| ||||||| |||||||||| ||||| || |
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| T |
8983766 |
aatgaaaataggcccaaaacgttaaatttagtgactcatcaattaa------catttaagagcattgcatttcatcacacatgatggttgttagatttat |
8983859 |
T |
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| Q |
127 |
gttcaaccaaactagtactgtgatttatat |
156 |
Q |
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| T |
8983860 |
ctacaaccaaactagtgttgtgatttatat |
8983889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 201 - 304
Target Start/End: Original strand, 9007733 - 9007835
Alignment:
| Q |
201 |
aaattgcaatagaacataatcaacatgacatagattaggtgctgtgtgccctgatattttcctaatggc-atcaaaggaatctataaccgttcgtgcaac |
299 |
Q |
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||||||||||||||||||||||| ||||||||||| || || || ||| ||||||||||||||| || || |||||||||||||| | |||||||| | |
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| T |
9007733 |
aaattgcaatagaacataatcaatatgacatagat--ggggcagtctgctctgatattttcctaaccgcaattaaaggaatctataaaccttcgtgcagc |
9007830 |
T |
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| Q |
300 |
atgcc |
304 |
Q |
| |
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||||| |
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| T |
9007831 |
atgcc |
9007835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 314
Target Start/End: Original strand, 8978710 - 8978847
Alignment:
| Q |
172 |
atcactttaaaattacttttaataaatggaaattgcaatagaacataatcaacatgacatagattaggtgctgtgtgccctgatattttcctaatggcat |
271 |
Q |
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| T |
8978710 |
atcactttaaa-ttacttt-aacaaatgaaaattgcaacagaacataatcaacatgacatagat---gggcactccattctaaaattttcctaatggcat |
8978804 |
T |
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| Q |
272 |
caaaggaatctataaccgttcgtgcaacatgccgaagaactca |
314 |
Q |
| |
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|||||||||||||||| |||| |||| | ||| |||||||||| |
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| T |
8978805 |
caaaggaatctataactgttcctgcagcgtgcagaagaactca |
8978847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 8978623 - 8978659
Alignment:
| Q |
120 |
gattgatgttcaaccaaactagtactgtgatttatat |
156 |
Q |
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| T |
8978623 |
gattgatgttcaaccaaactagtgttgtgatttatat |
8978659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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