View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14376_low_39 (Length: 348)
Name: NF14376_low_39
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_low_39 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 183; Significance: 6e-99; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 144 - 346
Target Start/End: Complemental strand, 17163413 - 17163211
Alignment:
| Q |
144 |
cttctatttgactaatttttgttggtttatgtaaaagttttcttagcataatccattgacaaagtcctcttgtacgcaactccattatagatcatgtctt |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17163413 |
cttctatttgactaatttttgttggtttatgtaaaagttttcttagcataatccattgaaaaggtcctcttgtacgcaactccattatatatcatgtctt |
17163314 |
T |
|
| Q |
244 |
ctctctcattcctcaaaattactattggcattgagagcagagattgcaggtttcgcgtaattttccagtctcactacacttttgacttagttttagacct |
343 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17163313 |
ctctctcattcctcaaaattactattggctttgagagcagagattgcaggtttcgcgtaattgtccagtctcactacacttttgacttagttttagacct |
17163214 |
T |
|
| Q |
344 |
ttg |
346 |
Q |
| |
|
||| |
|
|
| T |
17163213 |
ttg |
17163211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 144 - 346
Target Start/End: Complemental strand, 17159935 - 17159732
Alignment:
| Q |
144 |
cttctatttgactaatttttgttggtttatgtaaaagttttcttagcataatccattgacaaagtcctcttgtacgcaactccattatagatcatgtctt |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||| |||| | ||||||| ||||| ||||||| |
|
|
| T |
17159935 |
cttctatttgactaatttttgttggtttatgtaaaagttttcttagcatcattcattgacaaggtcctctcttacgaagctccattgtagattatgtctt |
17159836 |
T |
|
| Q |
244 |
ctctctcattcctc-aaaattactattggcattgagagcagagattgcaggtttcgcgtaattttccagtctcactacacttttgacttagttttagacc |
342 |
Q |
| |
|
||| |||||||||| ||||||| ||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
17159835 |
ctccctcattcctcaaaaattattattggctttgagagcagaaattgcaggtttcgcataattgtccagtctcactacacttttgacttagtattagacc |
17159736 |
T |
|
| Q |
343 |
tttg |
346 |
Q |
| |
|
|||| |
|
|
| T |
17159735 |
tttg |
17159732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 17163569 - 17163461
Alignment:
| Q |
19 |
cattctagttagacaaagagaaatgcaacgaacacacattttaaacaaacatttttacgtatatttttcaaacaaatgtaggcaaatataaattgaattt |
118 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||| |||||||||||||||||||||| |
|
|
| T |
17163569 |
cattctagttagagaaagagaaatgcaacgaacacacattttaaacaaacatttttacacatacttttcaatcaaacttaggcaaatataaattgaattt |
17163470 |
T |
|
| Q |
119 |
taatgaaat |
127 |
Q |
| |
|
||||||||| |
|
|
| T |
17163469 |
taatgaaat |
17163461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 17160094 - 17159985
Alignment:
| Q |
19 |
cattctagttagacaaagagaaatgcaacgaacacacattttaaacaaacatttttacgtatatttttcaaacaaatgtaggcaaatataaattgaattt |
118 |
Q |
| |
|
||||||| ||||| ||||| |||||| | ||||||| ||||| |||| ||||||| ||| |||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
17160094 |
cattctaattagagaaagaaaaatgctatgaacacatattttgaacacacattttaacgcatatttttcaaataaaggtaggcaaatataaattgaattt |
17159995 |
T |
|
| Q |
119 |
taatgaaatc |
128 |
Q |
| |
|
|||||||||| |
|
|
| T |
17159994 |
taatgaaatc |
17159985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 280
Target Start/End: Complemental strand, 21255319 - 21255238
Alignment:
| Q |
199 |
ttgacaaagtcctcttgtacgcaactccattatagatcatgtcttctctctcattcctcaaaattactattggcattgagag |
280 |
Q |
| |
|
||||||| ||| | |||| ||||||||| ||| ||||||||||||||| | |||||||||| | ||||||||||||||| |
|
|
| T |
21255319 |
ttgacaaggtcattttgtgcgcaactccgttagagatcatgtcttctccccaattcctcaaagtggttattggcattgagag |
21255238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University