View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_low_4 (Length: 706)
Name: NF14376_low_4
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 502; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 108 - 687
Target Start/End: Original strand, 31795697 - 31796276
Alignment:
| Q |
108 |
acactttgtataatcttgattgtatcaacacatccttgaattgaaaatacaaaagccaaaattgattcttccatccattttctccagcccaaacttcaca |
207 |
Q |
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|||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31795697 |
acaccttgtgtaatcttgattgtatcaacacatccttgagttgaaaatacaaaagccaaaattgattcttccatccattttctccaacccaaacttcaca |
31795796 |
T |
|
| Q |
208 |
gcggagcttatgattgcaacactttcacaataccacccttcttttttgatgtggaaaatcacataatgccacagccacgtaagataaaaagaattcttat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31795797 |
gcggagcttatgattgcaacactttcacaataccacccttcttttttgatgtggaaaatcacataatgctacagccacgtaagataaaaagaattcttat |
31795896 |
T |
|
| Q |
308 |
acctggtccaaaccaaaagctctggtagtcattattggaagaaaaaacactggcatagagaaaataaaggaacacaattaataatacatacaaacataac |
407 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31795897 |
acctggtccaaaccaaaagctctgatagtcattattggaagaaaaaacactgacatagagaaaataaaggaacacaattaataatacatacaaacataac |
31795996 |
T |
|
| Q |
408 |
gtggaaactttgaaattggagnnnnnnncaacaaccattgtctaacaaaaaccaaataataacattatgcaaatttttataacgcatatactactctcaa |
507 |
Q |
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||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31795997 |
gtgaaaactttgaaattggagaaaaaaacaacaaccattgtctaacaaaaaccaaataataacattatgcaaatttttataacgcatatactactctcaa |
31796096 |
T |
|
| Q |
508 |
acacacactgaactcattacatccacaccctccgaagcaaatacccagcttcatcccacaacattctaagaaaagggtataagagnnnnnnngacaaata |
607 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31796097 |
acacacactgaactcattacatccacaccctccgaagcaaatacccaacttcatcccacaacattctaagaaaagggtataagagaaaaaaagacaaata |
31796196 |
T |
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| Q |
608 |
caagcttaaagtgtttttaattgttgcatcttataacaaagaaataaagtctatataagtatcaatttgcttgtcttaca |
687 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31796197 |
caagcttaaagtgtttttaattgttgcatcttataacaaagaaataaagtctatataagtatcaatttgcttgtcttaca |
31796276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 31795562 - 31795666
Alignment:
| Q |
14 |
aagaatattcgtatgtcgaaaattaggcgaaaaacttttggtgcaacttgcatgttgacaagaagctcttcaaccaccgatataatctcacaacacactt |
113 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31795562 |
aagaatattcgtatgtcgaaaatcagacgaaaaacttttggtgcaacttgcatgttgacaagaagctcttcaaccaccgatataatctcacaacacactt |
31795661 |
T |
|
| Q |
114 |
tgtat |
118 |
Q |
| |
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||||| |
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|
| T |
31795662 |
tgtat |
31795666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 22189810 - 22189869
Alignment:
| Q |
56 |
gcaacttgcatgttgacaagaagctcttcaaccaccgatataatctcacaacacactttg |
115 |
Q |
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||||||| |||||||||| ||||||||||||||| | | ||||| ||| ||||||||||| |
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| T |
22189810 |
gcaacttccatgttgacaggaagctcttcaaccatcaacataatatcataacacactttg |
22189869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 164 - 268
Target Start/End: Complemental strand, 24307478 - 24307374
Alignment:
| Q |
164 |
caaaattgattcttccatccattttctccagcccaaacttcacagcggagcttatgattgcaacactttcacaataccacccttcttttttgatgtggaa |
263 |
Q |
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||||||||||| ||||||| |||||||| ||||||||||| |||||| ||| ||| ||||||||||||| | |||||||||||| |||||||||||| |
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| T |
24307478 |
caaaattgatttttccatcaattttctcaagcccaaactttttagcggaacttttgactgcaacactttcatagtaccacccttctcatttgatgtggaa |
24307379 |
T |
|
| Q |
264 |
aatca |
268 |
Q |
| |
|
|||| |
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|
| T |
24307378 |
gatca |
24307374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 243
Target Start/End: Original strand, 1604845 - 1604975
Alignment:
| Q |
114 |
tgtataatcttgattgtatcaacacatccttgaattgaaa-atacaaaagccaaaattgattcttccatccattttctccagcccaaacttcacagcgga |
212 |
Q |
| |
|
||||||||||||||||||| ||| | ||||||| |||||| | || ||| ||||||| |||||||| || ||||||| ||||||||||||| |||| | |
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| T |
1604845 |
tgtataatcttgattgtattaacccgtccttgacttgaaatttccacaagtcaaaattcattcttccttcaattttctatagcccaaacttcatagcgaa |
1604944 |
T |
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| Q |
213 |
gcttatgattgcaacactttcacaataccac |
243 |
Q |
| |
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| | ||||||||||||||| | |||||| |
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| T |
1604945 |
agtagtaattgcaacactttcatagtaccac |
1604975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 4034177 - 4034238
Alignment:
| Q |
44 |
aaaacttttggtgcaacttgcatgttgacaagaagctcttcaaccaccgatataatctcaca |
105 |
Q |
| |
|
||||||| ||||||| ||| ||||||| | ||| |||||||||||||||||||||||||| |
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| T |
4034177 |
aaaacttatggtgcagcttccatgttggtagaaagttcttcaaccaccgatataatctcaca |
4034238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 605 - 664
Target Start/End: Complemental strand, 52733025 - 52732966
Alignment:
| Q |
605 |
atacaagcttaaagtgtttttaattgttgcatcttataacaaagaaataaagtctatata |
664 |
Q |
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|||||| |||||||||||||| |||| |||||||||||||||||||||||||| |||||| |
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| T |
52733025 |
atacaaacttaaagtgttttttattggtgcatcttataacaaagaaataaagtttatata |
52732966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 52733453 - 52733358
Alignment:
| Q |
157 |
caaaagccaaaattgattcttccatccattttctcca-gcccaaacttcacagcggagcttatgattgcaacactttcacaataccacccttcttt |
251 |
Q |
| |
|
|||||| |||||||||| |||||||| |||||||| | ||| ||||||||| | || ||||||||||||||||||| | |||||||| ||||||| |
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| T |
52733453 |
caaaaggcaaaattgatgcttccatcaattttctctaagcctaaacttcacggtagaacttatgattgcaacacttttataataccacacttcttt |
52733358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 236
Target Start/End: Complemental strand, 4529275 - 4529149
Alignment:
| Q |
113 |
ttgtataatcttgattgtatcaacacatccttgaattgaaaat---acaaaagccaaaattgattcttccatccattttctccagcccaaacttcacagc |
209 |
Q |
| |
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|||||||||| |||||| ||| | |||||| ||| ||||||| ||| ||| ||||||||||||||||| | |||||||| |||||||| |||| | |
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| T |
4529275 |
ttgtataatcgtgattggatcgaaacatccatgacttgaaaactccacacaaggcaaaattgattcttccaccaattttctctagcccaaatttcaatac |
4529176 |
T |
|
| Q |
210 |
ggagcttatgattgcaacactttcaca |
236 |
Q |
| |
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| ||| ||||||||||||||||||| |
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| T |
4529175 |
aaaacttgtgattgcaacactttcaca |
4529149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 263
Target Start/End: Complemental strand, 7371329 - 7371259
Alignment:
| Q |
193 |
agcccaaacttcacagcggagcttatgattgcaacactttcacaataccacccttcttttttgatgtggaa |
263 |
Q |
| |
|
||||||||| ||| |||||| ||||| ||||||| |||||||| || |||||||||||| |||||||||| |
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|
| T |
7371329 |
agcccaaacatcatagcggaatttatggttgcaacgctttcacattatcacccttcttttctgatgtggaa |
7371259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 10149959 - 10149858
Alignment:
| Q |
14 |
aagaatattcgtatgtcgaaaattaggcgaaaaacttttggtgcaacttgcatgttgacaagaagctcttcaaccaccgatataatctcacaacacactt |
113 |
Q |
| |
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|||||| ||| | |||||||||| ||| ||||||||| |||| |||||| |||| | | |||| |||||||||||||| ||||||||| |||||| || |
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| T |
10149959 |
aagaattttcatgtgtcgaaaatcaggtgaaaaacttatggtacaacttttatgtgggccggaagttcttcaaccaccgacataatctcataacacaatt |
10149860 |
T |
|
| Q |
114 |
tg |
115 |
Q |
| |
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|| |
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|
| T |
10149859 |
tg |
10149858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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