View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_low_42 (Length: 341)
Name: NF14376_low_42
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 8 - 326
Target Start/End: Original strand, 3030321 - 3030639
Alignment:
| Q |
8 |
gaccagagaagagagcagggagaagagtgtttaaggagacaagacatccagtgtaccgaggagtacgaagaaggaacaataacaagtgggtttgtgagat |
107 |
Q |
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| T |
3030321 |
gaccaaagaagagagcagggagaagagtgtttaaggagacaagacatccagtgtaccgaggagtacgaagaaggaacaataacaagtgggtttgtgagat |
3030420 |
T |
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| Q |
108 |
gagagttcctaatattaacgttaacaaaaacaataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgct |
207 |
Q |
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| T |
3030421 |
gagagttcctaatattaacgttaacaaaaacaataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgct |
3030520 |
T |
|
| Q |
208 |
gcacttactcttaaaggaaaatcagcttgtcttaattttgctgactctgcatggcgattgacgttgccggagtccaatgatgcggtggagataaggagag |
307 |
Q |
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| T |
3030521 |
gcacttactcttaaaggaaaatcagcttgtcttaattttgctgactctgcatggcggttgacgttgccggagtcaaatgatgcggtggagataaggagag |
3030620 |
T |
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| Q |
308 |
ctgcgatggaggctgctaa |
326 |
Q |
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| T |
3030621 |
ctgcgatggaggctgctaa |
3030639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 324
Target Start/End: Original strand, 3037976 - 3038292
Alignment:
| Q |
8 |
gaccagagaagagagcagggagaagagtgtttaaggagacaagacatccagtgtaccgaggagtacgaagaaggaacaataacaagtgggtttgtgagat |
107 |
Q |
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| T |
3037976 |
gaccaaagaagagagcaggtagaagagtgttcaaggagacaagacatccggtgtaccgaggagtacgacgtaggaagaataacaagtgggtttgtgagat |
3038075 |
T |
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| Q |
108 |
gagagttcctaatattaacgttaacaaaaacaataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgct |
207 |
Q |
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| T |
3038076 |
gagagttcctaacaatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgct |
3038175 |
T |
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| Q |
208 |
gcacttactcttaaaggaaaatcagcttgtcttaattttgctgactctgcatggcgattgacgttgccggagtccaatgatgcggtggagataaggagag |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||| |||||||||||| | |
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| T |
3038176 |
gcacttactcttaaaggaaaatcagcttgtcttaattttgctgactctgcatggcggttgaggttgccggagtcgaatgatgcgacggagataaggaggg |
3038275 |
T |
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| Q |
308 |
ctgcgatggaggctgct |
324 |
Q |
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| T |
3038276 |
cggcgatggaggctgct |
3038292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 14 - 324
Target Start/End: Original strand, 3021113 - 3021423
Alignment:
| Q |
14 |
agaagagagcagggagaagagtgtttaaggagacaagacatccagtgtaccgaggagtacgaagaaggaacaataacaagtgggtttgtgagatgagagt |
113 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| | ||||| ||||||||||||||||||||||||||||| |
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| T |
3021113 |
agaagagagcaggtagaagagtgttcaaggagacaagacatccggtgtaccgaggagtacgacgtaggaagaataacaagtgggtttgtgagatgagagt |
3021212 |
T |
|
| Q |
114 |
tcctaatattaacgttaacaaaaacaataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcactt |
213 |
Q |
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|||||| | || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3021213 |
tcctaacaatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcactt |
3021312 |
T |
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| Q |
214 |
actcttaaaggaaaatcagcttgtcttaattttgctgactctgcatggcgattgacgttgccggagtccaatgatgcggtggagataaggagagctgcga |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||| |||||||||||| || |||| |
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| T |
3021313 |
actcttaaaggaaaatcagcttgtcttaattttgctgactctgcatggcggttgaggttgccggagtcgaatgatgcgacggagataaggagggcggcga |
3021412 |
T |
|
| Q |
314 |
tggaggctgct |
324 |
Q |
| |
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||||||||||| |
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| T |
3021413 |
tggaggctgct |
3021423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 148 - 277
Target Start/End: Complemental strand, 42553805 - 42553676
Alignment:
| Q |
148 |
aggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcacttactcttaaaggaaaatcagcttgtcttaattttg |
247 |
Q |
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|||||||||||||||||||||||||| ||||| ||||| ||||||||||| || ||||| ||||| | ||| || |||||||||||||||||||||| |
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| T |
42553805 |
aggatttggcttggaacatatccaacacctgagatggcagcacgtgcacacgacgttgccgcactggcacttcgcggtaaatcagcttgtcttaattttg |
42553706 |
T |
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| Q |
248 |
ctgactctgcatggcgattgacgttgccgg |
277 |
Q |
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|||||||||| ||||| || ||||||||| |
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| T |
42553705 |
ctgactctgcgtggcggttagcgttgccgg |
42553676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 42553904 - 42553852
Alignment:
| Q |
40 |
aaggagacaagacatccagtgtaccgaggagtacgaagaaggaacaataacaa |
92 |
Q |
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|||||||||||||||||||| ||| |||||||||||||||||||||| ||||| |
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| T |
42553904 |
aaggagacaagacatccagtatacagaggagtacgaagaaggaacaacaacaa |
42553852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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