View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14376_low_43 (Length: 335)

Name: NF14376_low_43
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14376_low_43
NF14376_low_43
[»] chr3 (3 HSPs)
chr3 (160-255)||(39980004-39980102)
chr3 (20-96)||(39979864-39979940)
chr3 (255-320)||(39980081-39980146)


Alignment Details
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 160 - 255
Target Start/End: Original strand, 39980004 - 39980102
Alignment:
Q  160 ggcagaccgtgtgttactcactccttcactctctt---caccaaccacaatggctactatcaccggcggcgccgccgcacgcatgattccctccgccac 255  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39980004 ggcagaccgtgtgttactcactccttcactctcttcttcaccaaccacaatggctactatcaccggcggcgccgccgcacgcatgattccctccgccac 39980102  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 39979864 - 39979940
Alignment:
Q  20 gtggattatttcacaaacacaaaaagtagagttttgattggcaaatccaggattaccatccaaaacacaaggagaag 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39979864 gtggattatttcacaaacacaaaaagtagagttttgattggcaaatccaggattaccatccaaaacacaaggagaag 39979940  T

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Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 255 - 320
Target Start/End: Original strand, 39980081 - 39980146
Alignment:
Q  255 cacgcatgattccctccgccactagagccaccgtctcactttcaacttcccgttcgttcttctcat 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39980081 cacgcatgattccctccgccactagagccaccgtctcactttcaacttcccgttcgttcttctcat 39980146  T

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