View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14376_low_46 (Length: 325)
Name: NF14376_low_46
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 1507767 - 1507457
Alignment:
| Q |
1 |
attttctccctctcaaaaagcttcttcatatgaaagttatcaggaataaatgcatctttcttatctaccagaaatattttattatttcctgatgttgcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1507767 |
attttctccctctcaaaaagcttcttcatatgaaagttatcaggaataaatgcatctttcttatctaccagaaatattttattatttcctgatgttgcag |
1507668 |
T |
|
| Q |
101 |
gcagtttcatcaaactctcagcaagttttttctcttgttttgtgctcaaatgtttcgagatagacatccagaacctgcaacactcatcgtatgacaattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1507667 |
gcagtttcatcaaactctcagcaagttttttctcttgttttgtgcttaaatgtttcgagatagacatccagaacctgcaacactcatcgtatgacaattg |
1507568 |
T |
|
| Q |
201 |
ctccattgaattcccccaatcattccaaaggtcaacatagtcttctagtgagggcttgttcttgacttccattgcaagatacnnnnnnncaagaatattg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
1507567 |
ctccattgaattcccccaatcattccaaaggtcaacatagtcttctagtgagggcttgttcttgacttccattgcaagatacaaaaaaacaagaatattg |
1507468 |
T |
|
| Q |
301 |
ccatcatagat |
311 |
Q |
| |
|
||||||||||| |
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|
| T |
1507467 |
ccatcatagat |
1507457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 277
Target Start/End: Complemental strand, 3013424 - 3013158
Alignment:
| Q |
11 |
tctcaaaaagcttcttcatatgaaagttatcaggaataaatgcatctttcttatctaccagaaatattttattatttcctgatgttgcaggcagtttcat |
110 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||| ||| |||||||| |
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|
| T |
3013424 |
tctcaaaaagcttcttcatatgaaggctatcaggaataaaaacatcttccttatctaccagaaatatttcattatttcctgatgttgtaggtagtttcat |
3013325 |
T |
|
| Q |
111 |
caaactctcagcaagttttttctcttgttttgtgctcaaatgtttcgagatagacatccagaacctgcaacactcatcgtatgacaattgctccattgaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||| ||||||| |
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|
| T |
3013324 |
caaactctcagcaagttttttctcttcatttgtgctcaaatgtttcgagatagacatccagaacctgcagcactcatcataggacaattgcttcattgaa |
3013225 |
T |
|
| Q |
211 |
ttcccccaatcattccaaaggtcaacatagtcttctagtgagggcttgttcttgacttccattgcaa |
277 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| |||||||||| |
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|
| T |
3013224 |
ttcccccaatcattccaaaggtcaacataatcttctagcgagggcttattcttgatatccattgcaa |
3013158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 11 - 276
Target Start/End: Original strand, 2945999 - 2946264
Alignment:
| Q |
11 |
tctcaaaaagcttcttcatatgaaagttatcaggaataaatgcatctttcttatctaccagaaatattttattatttcctgatgttgcaggcagtttcat |
110 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||| |||||| ||||||||||||| |||||| |||||||||| ||| |||||||| |
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|
| T |
2945999 |
tctcaaaaagcttcttcatatgaagactatcaggaataaaaacatcttccttatcaaccagaaatatttcattattccctgatgttgtaggtagtttcat |
2946098 |
T |
|
| Q |
111 |
caaactctcagcaagttttttctcttgttttgtgctcaaatgtttcgagatagacatccagaacctgcaacactcatcgtatgacaattgctccattgaa |
210 |
Q |
| |
|
||||||| |||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| || |||| |
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|
| T |
2946099 |
caaactcgcagcaagttttttctcttcatttgttctcaaatgtttcgagatagacgtccagaacctgcaacactcatcatatgacaattgcttcactgaa |
2946198 |
T |
|
| Q |
211 |
ttcccccaatcattccaaaggtcaacatagtcttctagtgagggcttgttcttgacttccattgca |
276 |
Q |
| |
|
| |||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| |||| |
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|
| T |
2946199 |
cttccccaatcattccaaaggtcaacataatcatctagtgagggcttcttcttgacttccaatgca |
2946264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 3 - 247
Target Start/End: Original strand, 2929350 - 2929594
Alignment:
| Q |
3 |
tttctccctctcaaaaagcttcttcatatgaaagttatcaggaataaatgcatctttcttatctaccagaaatattttattatttcctgatgttgcaggc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||| ||||||||| |||| || |||| |
|
|
| T |
2929350 |
tttctccctctcaaaaagcttcttcatatgaagattatcgggaataaaagcatcttttttatctaccagaaatatttcattatttcccgatgatgtaggc |
2929449 |
T |
|
| Q |
103 |
agtttcatcaaactctcagcaagttttttctcttgttttgtgctcaaatgtttcgagatagacatccagaacctgcaacactcatcgtatgacaattgct |
202 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || |||||| |||||||| |||| |||||||| ||||||||||||| |
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|
| T |
2929450 |
agtttcatcaaactctctgcaagttttttctcttgatttgtgctcaaatgttttgatatagacgtccagaacttgcagcactcatcatatgacaattgct |
2929549 |
T |
|
| Q |
203 |
ccattgaattcccccaatcattccaaaggtcaacatagtcttcta |
247 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
2929550 |
ccattgagctcccccaatcattccagaggtcaacataatcttcta |
2929594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 37794731 - 37794973
Alignment:
| Q |
12 |
ctcaaaaagcttcttcatatgaaagttatcaggaataaatgcatctttcttatctaccagaaatattttattatttcctgatgttgcaggcagtttcatc |
111 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| ||||| |||||||||| || | ||||||||| | || |||||| |||| |||| ||||| || |
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|
| T |
37794731 |
ctcaaaaagcttcttcagatgaaggttatcaggtataaaaacatctttcttgtccagcagaaatatctctttgcttcctgttgttacaggtagtttgctc |
37794830 |
T |
|
| Q |
112 |
aaactctcagcaagttttttctcttgttttgtgctcaaatgtttcgagatagacatccagaacctgcaacactcatcgtatgacaattgctccattgaat |
211 |
Q |
| |
|
|| ||||||| |||||| ||||| ||||||| |||||||||| |||| |||||||||| | || |||| || || ||||||| |||| |||| |
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|
| T |
37794831 |
aacctctcagaaagtttcttctcagtatttgtgcccaaatgtttcaggataaacatccagaatttccagcacttgtcatacgacaattcttccaatgaac |
37794930 |
T |
|
| Q |
212 |
tcccccaatcattccaaaggtcaacatagtcttctagtgaggg |
254 |
Q |
| |
|
|| |||| ||||||||||| |||||||| || || |||||||| |
|
|
| T |
37794931 |
tctcccattcattccaaagatcaacataatcatcaagtgaggg |
37794973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 173
Target Start/End: Original strand, 2919865 - 2920026
Alignment:
| Q |
12 |
ctcaaaaagcttcttcatatgaaagttatcaggaataaatgcatctttcttatctaccagaaatattttattatttcctgatgttgcaggcagtttcatc |
111 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||| ||||| |||| | ||||||||||| || | |||| |||| |||| ||||| ||| |
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|
| T |
2919865 |
ctcaaaaagcttcttcagatgaagattatcaggaataaacaagtcttttttatgcaacagaaatatttctttgctgcctgttgttacaggtagtttgatc |
2919964 |
T |
|
| Q |
112 |
aaactctcagcaagttttttctcttgttttgtgctcaaatgtttcgagatagacatccagaa |
173 |
Q |
| |
|
| ||||||| ||||| ||||||| | ||| || ||| |||||| |||| |||||||||| |
|
|
| T |
2919965 |
agcctctcagaaagttctttctctggattttcgcccaagtgtttcaggataaacatccagaa |
2920026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 7 - 268
Target Start/End: Complemental strand, 4917112 - 4916851
Alignment:
| Q |
7 |
tccctctcaaaaagcttcttcatatgaaagttatcaggaataaatgcatctttcttatctaccagaaatattttattatttcctgatgttgcaggcagtt |
106 |
Q |
| |
|
|||||||||||||||||| ||||||| | |||||||||||| || ||||||| ||| || | ||||||||| |||| ||||| |||||||||||| |||| |
|
|
| T |
4917112 |
tccctctcaaaaagcttcatcatatgtaggttatcaggaatgaaagcatcttccttgtcaagcagaaatatgttatcatttcttgatgttgcaggtagtt |
4917013 |
T |
|
| Q |
107 |
tcatcaaactctcagcaagttttttctcttgttttgtgctcaaatgtttcgagatagacatccagaacctgcaacactcatcgtatgacaattgctccat |
206 |
Q |
| |
|
| || |||||||| |||||||| |||| ||||||| ||||||| |||||||||||||| ||||||||||||| |||||||| | ||||||||| | || |
|
|
| T |
4917012 |
taataaaactctctgcaagtttggtctcgtgttttgagctcaaaagtttcgagatagacttccagaacctgcagcactcatcatgtgacaattgtttcac |
4916913 |
T |
|
| Q |
207 |
tgaattcccccaatcattccaaaggtcaacatagtcttctagtgagggcttgttcttgactt |
268 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| || |||||||| |||||||||||||||| |
|
|
| T |
4916912 |
tgaactcccccaatcattccaaaggtcaacataatcatctagtgacggcttgttcttgactt |
4916851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 28023744 - 28023986
Alignment:
| Q |
12 |
ctcaaaaagcttcttcatatgaaagttatcaggaataaatgcatctttcttatctaccagaaatattttattatttcctgatgttgcaggcagtttcatc |
111 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| ||||| |||||||||| || | ||||||||| | || |||||| |||| |||| ||||| || |
|
|
| T |
28023744 |
ctcaaaaagcttcttcagatgaaggttatcaggtataaaaacatctttcttgtccagcagaaatatctctttgcttcctgttgttacaggtagtttgctc |
28023843 |
T |
|
| Q |
112 |
aaactctcagcaagttttttctcttgttttgtgctcaaatgtttcgagatagacatccagaacctgcaacactcatcgtatgacaattgctccattgaat |
211 |
Q |
| |
|
|| ||||| | |||||| |||||| ||||||| |||||||||| |||| |||||||||| | || |||| || || ||||||| |||| |||| |
|
|
| T |
28023844 |
aacctctccgaaagtttcttctctgtatttgtgcccaaatgtttcaggataaacatccagaatttccagcacttgtcatacgacaattcttccaatgaac |
28023943 |
T |
|
| Q |
212 |
tcccccaatcattccaaaggtcaacatagtcttctagtgaggg |
254 |
Q |
| |
|
|| |||| ||||||||||| |||||||| || || |||||||| |
|
|
| T |
28023944 |
tctcccattcattccaaagatcaacataatcatcaagtgaggg |
28023986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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