View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_low_5 (Length: 695)
Name: NF14376_low_5
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 25 - 493
Target Start/End: Original strand, 21665836 - 21666305
Alignment:
| Q |
25 |
caaaggcatgctgacattggttaatctttttgtaatnnnnnnn-tttgacaggtgatggcattggaattgggggcatacaaaatcagagtgaattcaata |
123 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21665836 |
caaaggcatgctgacattggttaatctttttgtaataaaaaaaatttgacaggtgatggcattggaattgggggcatacaaaatcagagtgaattcaata |
21665935 |
T |
|
| Q |
124 |
tcaccaggacttttcaaatctgaaattactgaaagtttgatgaagaaagattggctaaacaatgtagccataagaacagtgccattaagagaatggggga |
223 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21665936 |
tcaccaggacttttcaaatctgaaattactgaaagtttgatgaagaaagattggctaaacaatgtagccataagaacagtgccattaagagaatggggga |
21666035 |
T |
|
| Q |
224 |
cttcaaatccagcattaacatcaattgctcgctacttaattcatgattcttctgaatatgtgacaggaaatatatttattgctgatgctggtgctacctt |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21666036 |
cttcaaatccagcattaacatcaattgctcgctacttaattcatgattcttctgaatatgtgacaggaaatatatttattgctgatgctggtgctacctt |
21666135 |
T |
|
| Q |
324 |
accaggctttcctatttattcctcactatgaatacttgatatgatacactttgcaatggcaaaaaatatgatgagtgaaacttggtttcaacannnnnnn |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21666136 |
accaggctttcctatttattcctcactatgaatacttgatatgatacactttgcaatggcaaaaaatataatgagtgaaacttggtttcaacattttttt |
21666235 |
T |
|
| Q |
424 |
nngaacatcagttaaaatgttctcatggttacaaatctacaggaaatatgttatatttgctcttcttatt |
493 |
Q |
| |
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||||| |||||| |||||||||||||||| |||||| |||||||||| ||| ||||||||| ||||| |
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| T |
21666236 |
tttaacatgagttaagatgttctcatggttactaatctataggaaatatgatatttttgctctttttatt |
21666305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 25 - 493
Target Start/End: Original strand, 21674600 - 21675069
Alignment:
| Q |
25 |
caaaggcatgctgacattggttaatctttttgtaatnnnnnnn-tttgacaggtgatggcattggaattgggggcatacaaaatcagagtgaattcaata |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21674600 |
caaaggcatgctgacattggttaatctttttgtaataaaaaaaatttgacaggtgatggcattggaattgggggcatacaaaatcagagtgaattcaata |
21674699 |
T |
|
| Q |
124 |
tcaccaggacttttcaaatctgaaattactgaaagtttgatgaagaaagattggctaaacaatgtagccataagaacagtgccattaagagaatggggga |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21674700 |
tcaccaggacttttcaaatctgaaattactgaaagtttgatgaagaaagattggctaaacaatgtagccataagaacagtgccattaagagaatggggga |
21674799 |
T |
|
| Q |
224 |
cttcaaatccagcattaacatcaattgctcgctacttaattcatgattcttctgaatatgtgacaggaaatatatttattgctgatgctggtgctacctt |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21674800 |
cttcaaatccagcattaacatcaattgctcgctacttaattcatgattcttctgaatatgtgacaggaaatatatttattgctgatgctggtgctacctt |
21674899 |
T |
|
| Q |
324 |
accaggctttcctatttattcctcactatgaatacttgatatgatacactttgcaatggcaaaaaatatgatgagtgaaacttggtttcaacannnnnnn |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21674900 |
accaggctttcctatttattcctcactatgaatacttgatatgatacactttgcaatggcaaaaaatataatgagtgaaacttggtttcaacattttttt |
21674999 |
T |
|
| Q |
424 |
nngaacatcagttaaaatgttctcatggttacaaatctacaggaaatatgttatatttgctcttcttatt |
493 |
Q |
| |
|
||||| |||||| |||||||||||||||| |||||| |||||||||| ||| ||||||||| ||||| |
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| T |
21675000 |
tttaacatgagttaagatgttctcatggttactaatctataggaaatatgatatttttgctctttttatt |
21675069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 69 - 356
Target Start/End: Original strand, 21661988 - 21662275
Alignment:
| Q |
69 |
ttgacaggtgatggcattggaattgggggcatacaaaatcagagtgaattcaatatcaccaggacttttcaaatctgaaattactgaaagtttgatgaag |
168 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21661988 |
ttgacaggtaatggcattggaattgggggcacacaaaatcagagtgaattcaatatcaccaggacttttcaaatctgaaattactgaaagtttgatgaag |
21662087 |
T |
|
| Q |
169 |
aaagattggctaaacaatgtagccataagaacagtgccattaagagaatgggggacttcaaatccagcattaacatcaattgctcgctacttaattcatg |
268 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
21662088 |
aaagattggctaaacaatgtagccaagagaacagtgccattaagagaatggggcacttcaaatccagcattaaccaaaattgttcgctacttaattcatg |
21662187 |
T |
|
| Q |
269 |
attcttctgaatatgtgacaggaaatatatttattgctgatgctggtgctaccttaccaggctttcctatttattcctcactatgaat |
356 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
21662188 |
attcttctgaatatgtgacaggaaatatatttattgctgatgctggtgctaccttaccaggctttcctatttattcttcactatgaat |
21662275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 69 - 356
Target Start/End: Original strand, 21670752 - 21671039
Alignment:
| Q |
69 |
ttgacaggtgatggcattggaattgggggcatacaaaatcagagtgaattcaatatcaccaggacttttcaaatctgaaattactgaaagtttgatgaag |
168 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21670752 |
ttgacaggtaatggcattggaattgggggcacacaaaatcagagtgaattcaatatcaccaggacttttcaaatctgaaattactgaaagtttgatgaag |
21670851 |
T |
|
| Q |
169 |
aaagattggctaaacaatgtagccataagaacagtgccattaagagaatgggggacttcaaatccagcattaacatcaattgctcgctacttaattcatg |
268 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
21670852 |
aaagattggctaaacaatgtagccaagagaacagtgccattaagagaatggggcacttcaaatccagcattaaccaaaattgttcgctacttaattcatg |
21670951 |
T |
|
| Q |
269 |
attcttctgaatatgtgacaggaaatatatttattgctgatgctggtgctaccttaccaggctttcctatttattcctcactatgaat |
356 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
21670952 |
attcttctgaatatgtgacaggaaatatatttattgctgatgctggtgctaccttaccaggctttcctatttattcttcactatgaat |
21671039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 351 - 416
Target Start/End: Original strand, 21662764 - 21662829
Alignment:
| Q |
351 |
atgaatacttgatatgatacactttgcaatggcaaaaaatatgatgagtgaaacttggtttcaaca |
416 |
Q |
| |
|
|||||||| |||||||||| ||| | ||||||| |||||||| ||||||||||||||||||||||| |
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| T |
21662764 |
atgaatacctgatatgatatactcttcaatggccaaaaatattatgagtgaaacttggtttcaaca |
21662829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 351 - 416
Target Start/End: Original strand, 21671528 - 21671593
Alignment:
| Q |
351 |
atgaatacttgatatgatacactttgcaatggcaaaaaatatgatgagtgaaacttggtttcaaca |
416 |
Q |
| |
|
|||||||| |||||||||| ||| | ||||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
21671528 |
atgaatacctgatatgatatactcttcaatggccaaaaatattatgagtgaaacttggtttcaaca |
21671593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 68 - 157
Target Start/End: Original strand, 19979566 - 19979655
Alignment:
| Q |
68 |
tttgacaggtgatggcattggaattgggggcatacaaaatcagagtgaattcaatatcaccaggacttttcaaatctgaaattactgaaa |
157 |
Q |
| |
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|||||||||| ||||| ||||||||||| || ||||||| ||||||||||||||||| || ||| |||||||||||||||| ||||||| |
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| T |
19979566 |
tttgacaggtcatggctttggaattgggtgctcacaaaattagagtgaattcaatatctcctggaattttcaaatctgaaatcactgaaa |
19979655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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