View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_low_52 (Length: 314)
Name: NF14376_low_52
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 41551421 - 41551710
Alignment:
| Q |
17 |
catgctaccatgattttgtgtacatagccgttttcaagagctaatgaatattctagattgttccctatttatgtccccatcaaaaagaattcaacannnn |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41551421 |
catgctaccatgattttgtgtacatagccgttttcaagagctaatgaatattctagattgttccctatt-atgtccccatcaaaaagaattcaacatttt |
41551519 |
T |
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| Q |
117 |
nnnnnaatttcattattaagagagctcatgataagaaaaatactaatcccctaataaggtat-----tgactgcagaactgacttgatgagaatctctct |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41551520 |
tttt-aatttcattattaagagagctcatgataagaaaaatactaatcccgtaataaggtattgtattgactgcagaactgacttgatgagaatctctct |
41551618 |
T |
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| Q |
212 |
accaacttgagaaagacattgattgcctcaagaaataaaagtaatccaat---taatacatttgtgttaaaataatcttaaaattcccatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
41551619 |
accaacttgagaaagacattgattgcctcaagaaataaaagtaatccaattaataatacatttgtgttaaaataatcttaaaattccaatat |
41551710 |
T |
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