View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14376_low_55 (Length: 308)
Name: NF14376_low_55
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_low_55 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 290
Target Start/End: Complemental strand, 13831705 - 13831418
Alignment:
| Q |
14 |
aaatgatttatttagaaaattttatacataatttattgaaagaaagaaattgaaataaatgttacgtataatttattcaattgatctttgaattttgttt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13831705 |
aaatgatttatttagaaaattttatacataatttattgaaagaaagaaattgaaataaatgttacgtataatttattcaattgatctttgaattttgttt |
13831606 |
T |
|
| Q |
114 |
agaaaaaacacgtgtgctatttgtattttaagaagnnnnnnnngtagttgaaccttttaaaaataaaaagacaagatattaaacatctct---------- |
203 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13831605 |
agaaaaaacaagtgtgctatttgtattttaagaagaaaaaaaagtagttgaaccttttaaaaataaaaagacaagatattaaacatctctaaacaaatca |
13831506 |
T |
|
| Q |
204 |
aaattttatgtgcaaactacaaaagtaggataattgtaaagagaaattcttaata-ccccattgttctctctcctgctttcttagcat |
290 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
13831505 |
aaattttatgtgcaaactacaaaagttggataattgtaaagagaaattcttaatacccccattgttctctctcctactttcttagcat |
13831418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 13824768 - 13824703
Alignment:
| Q |
80 |
tataatttattcaattgatctttgaattttgtttaga-aaaaacacgtgtgctatttgtattttaa |
144 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||| || ||| |||||| |||||| |
|
|
| T |
13824768 |
tataatttattcaaaagatctttgaattttgtttagataaaaacaagtatgcaatttgtgttttaa |
13824703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University