View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14376_low_66 (Length: 255)

Name: NF14376_low_66
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14376_low_66
NF14376_low_66
[»] chr7 (5 HSPs)
chr7 (11-240)||(12081855-12082083)
chr7 (44-171)||(12098911-12099038)
chr7 (43-124)||(37040755-37040838)
chr7 (183-232)||(2757571-2757620)
chr7 (183-232)||(2762122-2762171)
[»] chr8 (2 HSPs)
chr8 (43-235)||(12930519-12930712)
chr8 (43-235)||(12935265-12935458)
[»] chr4 (5 HSPs)
chr4 (43-235)||(11104314-11104505)
chr4 (43-122)||(14173892-14173973)
chr4 (43-122)||(14178646-14178727)
chr4 (43-121)||(28607135-28607215)
chr4 (43-121)||(28611897-28611977)
[»] chr1 (1 HSPs)
chr1 (43-166)||(34907051-34907175)
[»] chr3 (1 HSPs)
chr3 (43-212)||(51302028-51302197)
[»] chr2 (1 HSPs)
chr2 (43-121)||(8539139-8539219)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 12082083 - 12081855
Alignment:
Q  11 agattatacttacccggtacatttttcccctttctctgaatttacccaacactctaattttccgatcacacacttctacacacaaaaactttgtattttc 110  Q
    |||| |||| |||||| || ||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||    
T  12082083 agataatacctacccgatatatttttcccctttttctggatttacccaacactctaattttctgatcacacacttctacaca-aaaaactttgtatcttc 12081985  T
Q  111 acttatgcttcaatactaaagctttgtattttctttgagctttggataattttcttcacatgccaaggcctctatttatatatgaaatgtggtaatctga 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12081984 acttatgcttcaatactaaagctttgtattttctttgagctttggataattttcttcacatgccaaggcttctatttatatatgaaatgtggtaatctga 12081885  T
Q  211 attcaattctcctttgtcaaatgatcttgc 240  Q
    ||||||||||||||||||||||||||||||    
T  12081884 attcaattctcctttgtcaaatgatcttgc 12081855  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 44 - 171
Target Start/End: Complemental strand, 12099038 - 12098911
Alignment:
Q  44 ctctgaatttacccaacactctaattttccgatcacacacttctacacacaaaaactttgtattttcacttatgcttcaatactaaagctttgtattttc 143  Q
    |||||||||||| |||||||||| ||||||  ||||| |||||||||||||||||||||||| |||||||| | |||||||||   ||||||||||||||    
T  12099038 ctctgaatttactcaacactctatttttcctttcacatacttctacacacaaaaactttgtagtttcacttctacttcaatacccgagctttgtattttc 12098939  T
Q  144 tttgagctttggataattttcttcacat 171  Q
    ||||||||| |||| |||||||||||||    
T  12098938 tttgagcttcggattattttcttcacat 12098911  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 37040755 - 37040838
Alignment:
Q  43 tctctgaatttacccaacactctaattttccgatcacacacttct--acacacaaaaactttgtattttcacttatgcttcaat 124  Q
    |||||| |||||| |||||||||| ||||||  ||||||||||||  ||||||| || |||||||||||||||| |||||||||    
T  37040755 tctctggatttactcaacactctatttttcctctcacacacttctacacacacagaagctttgtattttcacttctgcttcaat 37040838  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 2757571 - 2757620
Alignment:
Q  183 tatttatatatgaaatgtggtaatctgaattcaattctcctttgtcaaat 232  Q
    |||||||| ||||||||||| ||| |||||||||| || |||||||||||    
T  2757571 tatttataaatgaaatgtggcaatgtgaattcaatgcttctttgtcaaat 2757620  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 2762122 - 2762171
Alignment:
Q  183 tatttatatatgaaatgtggtaatctgaattcaattctcctttgtcaaat 232  Q
    |||||||| ||||||||||| ||| |||||||||| || |||||||||||    
T  2762122 tatttataaatgaaatgtggcaatgtgaattcaatgcttctttgtcaaat 2762171  T

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Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 43 - 235
Target Start/End: Complemental strand, 12930712 - 12930519
Alignment:
Q  43 tctctgaatttacccaacactctaattttccgatcacacacttctacacacaaaaa--ctttgtattttcacttatgcttcaatactaaagctttgtatt 140  Q
    |||||| |||||| |||||||||| ||||||  ||||||||||||||||||| | |  |||||||||||||||| |||||||||||| |||||| |||||    
T  12930712 tctctggatttactcaacactctatttttcctctcacacacttctacacacacagaagctttgtattttcacttctgcttcaatactgaagctt-gtatt 12930614  T
Q  141 ttctttgagctttggataattttcttcacatgccaaggcctctatttatatatgaaatgtggtaatctgaattcaattctcctttgtcaaatgat 235  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||  || ||||||||||||||||||||||||||||    
T  12930613 ttctttgagcttcggatgattttcttcacatgccaaggcctctatttatacatgaaatgtggctatgtgaattcaattctcctttgtcaaatgat 12930519  T

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Target: chr8; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 43 - 235
Target Start/End: Complemental strand, 12935458 - 12935265
Alignment:
Q  43 tctctgaatttacccaacactctaattttccgatcacacacttctacacacaaaaa--ctttgtattttcacttatgcttcaatactaaagctttgtatt 140  Q
    |||||| |||||| |||||||||| ||||||  ||||||||||||||||||| | |  |||||||||||||||| |||||||||||| |||||| |||||    
T  12935458 tctctggatttactcaacactctatttttcctctcacacacttctacacacacagaagctttgtattttcacttctgcttcaatactgaagctt-gtatt 12935360  T
Q  141 ttctttgagctttggataattttcttcacatgccaaggcctctatttatatatgaaatgtggtaatctgaattcaattctcctttgtcaaatgat 235  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||  || ||||||||||||||||||||||||||||    
T  12935359 ttctttgagcttcggatgattttcttcacatgccaaggcctctatttatacatgaaatgtggctatgtgaattcaattctcctttgtcaaatgat 12935265  T

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Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 43 - 235
Target Start/End: Complemental strand, 11104505 - 11104314
Alignment:
Q  43 tctctgaatttacccaacactctaattttccgatcacacacttctacacacaaaaactttgtattttcacttatgcttcaatactaaagctttgtatttt 142  Q
    |||||| |||||| |||||||||| |||| |  ||||||||||||||||| | || ||||||||||  |||| |||||||||  | ||||||||||||||    
T  11104505 tctctggatttactcaacactctattttttctctcacacacttctacacatagaagctttgtatttg-acttctgcttcaatgttgaagctttgtatttt 11104407  T
Q  143 ctttgagctttggataattttcttcacatgccaaggcctctatttatatatgaaatgtggtaatctgaattcaattctcctttgtcaaatgat 235  Q
    ||||||||||||| | ||||||||||||||||||||||| |||||||| |||||||||||  || ||||||||||||||||||||||||||||    
T  11104406 ctttgagctttggttgattttcttcacatgccaaggcctatatttatacatgaaatgtggctatgtgaattcaattctcctttgtcaaatgat 11104314  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 14173973 - 14173892
Alignment:
Q  43 tctctgaatttacccaacactctaattttccgatcacacacttctaca--cacaaaaactttgtattttcacttatgcttca 122  Q
    |||||| |||||| |||||||||| ||||||  |||||||||||||||  |||| ||||||||||||||||||| |||||||    
T  14173973 tctctggatttactcaacactctatttttcctctcacacacttctacacacacagaaactttgtattttcacttctgcttca 14173892  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 14178727 - 14178646
Alignment:
Q  43 tctctgaatttacccaacactctaattttccgatcacacacttctaca--cacaaaaactttgtattttcacttatgcttca 122  Q
    |||||| |||||| |||||||||| ||||||  |||||||||||||||  |||| || |||||||||||||||| |||||||    
T  14178727 tctctggatttactcaacactctatttttcctctcacacacttctacacacacagaagctttgtattttcacttctgcttca 14178646  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 28607135 - 28607215
Alignment:
Q  43 tctctgaatttacccaacactctaattttccgatcacacacttct--acacacaaaaactttgtattttcacttatgcttc 121  Q
    |||||| |||||| |||||||||| ||||||  ||||||||||||  ||||||| || |||||||||||||||| ||||||    
T  28607135 tctctggatttactcaacactctatttttcctctcacacacttctacacacacagaagctttgtattttcacttctgcttc 28607215  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 28611897 - 28611977
Alignment:
Q  43 tctctgaatttacccaacactctaattttccgatcacacacttct--acacacaaaaactttgtattttcacttatgcttc 121  Q
    |||||| |||||| |||||||||| ||||||  ||||||||||||  ||||||| || |||||||||||||||| ||||||    
T  28611897 tctctggatttactcaacactctatttttcctctcacacacttctacacacacagaagctttgtattttcacttctgcttc 28611977  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 166
Target Start/End: Complemental strand, 34907175 - 34907051
Alignment:
Q  43 tctctgaatttacccaacactctaattttccgatcacacacttctaca--cacaaaaactttgtattttcacttatgcttcaatactaaagctttgtatt 140  Q
    |||||| |||||| |||||||||| ||||||  |||||||||||||||  |||| || |||||||||||||||| |||||||||||| |||| |||||||    
T  34907175 tctctggatttactcaacactctatttttcctctcacacacttctacacacacagaagctttgtattttcacttctgcttcaatactgaagc-ttgtatt 34907077  T
Q  141 ttctttgagctttggataattttctt 166  Q
    |||||||||||| |||| ||||||||    
T  34907076 ttctttgagcttcggatgattttctt 34907051  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 212
Target Start/End: Complemental strand, 51302197 - 51302028
Alignment:
Q  43 tctctgaatttacccaacactctaattttccgatcacacacttctacacacaaaaa--ctttgtattttcacttatgcttcaatactaaagctttgtatt 140  Q
    |||||| |||||| ||| |||||| ||||||   |||||||||||||||||| | |  ||||||||||||||||||||||  || || ||||||||||||    
T  51302197 tctctggatttactcaatactctatttttcctcacacacacttctacacacacagaagctttgtattttcacttatgctttgatgctgaagctttgtatt 51302098  T
Q  141 ttctttgagctttggataattttcttcacatgccaaggcctctatttatatatgaaatgtggtaatctgaat 212  Q
    | |||| |||||  ||| |||| |||||  || ||  ||||||||||||| |||||||| || ||| |||||    
T  51302097 t-ctttaagcttcagatgatttccttcat-tgacattgcctctatttatagatgaaatgaggaaatgtgaat 51302028  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 121
Target Start/End: Complemental strand, 8539219 - 8539139
Alignment:
Q  43 tctctgaatttacccaacactctaattttccgatcacacacttctaca--cacaaaaactttgtattttcacttatgcttc 121  Q
    |||||||||||||  |||||| || ||||||  |||||||||||||||  |||| || |||||||||||||||| ||||||    
T  8539219 tctctgaatttactgaacactatatttttcctctcacacacttctacacacacagaagctttgtattttcacttctgcttc 8539139  T

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