View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_low_7 (Length: 614)
Name: NF14376_low_7
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 488; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 18 - 587
Target Start/End: Original strand, 19199407 - 19199980
Alignment:
| Q |
18 |
cccttcaggga--atattgtcctgtaaaatcaagacccttaacagaaaagggtgttgaggattttataatgatgattgaatgatggggattccccttcgt |
115 |
Q |
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| T |
19199407 |
cccttcagggacaatatggtcctgtaaaatcaagacccttaaaagaaaagggtgttgaggattttataatgatgtttgaatgatggagattccccttcgt |
19199506 |
T |
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| Q |
116 |
attggtgatcggttcaacagagaaaacatgagattttcaatggtgagattctgatcaaacaagggttctcaatagttttcatattcaatatttaatttat |
215 |
Q |
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| T |
19199507 |
attggtgatcggttcaacagagaaaacatgagattttcaatggtgagattctgatcaaacaagggttctcaatagttttcatattcaatatttaatttat |
19199606 |
T |
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| Q |
216 |
tgtaaaataacgttgaaaaactagctttttcaatcttgttaccaccattaacatggtaaatattgtaacaataagcaagatatttatgactgcaatatat |
315 |
Q |
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| T |
19199607 |
tgcaaaataacgttgaaaaactagctttttcaatcttgttaccaccatttacatggtaaatattgtaacaataagcaagatatatatgactgcaatatat |
19199706 |
T |
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| Q |
316 |
ttgcaatacatgtttatcatccaataagatttgtgagaagaaaattcagagcaactaacctcatttgagttcataaaattctccattctactgggagggt |
415 |
Q |
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| T |
19199707 |
ttgcaatacatgtttaccatccaataagatgtgtgagaagaaaattcagagtaactaacctcatttgagttcataaaattctccattctactgggagggt |
19199806 |
T |
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| Q |
416 |
tttattctcaggttttccttctatcacttatatgggtttgttatttgtggggccatcatttgaaggagaacaagcaaggttaaatatactttgcatatgg |
515 |
Q |
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| T |
19199807 |
tttattctcaggttttccttctatcacttatatgggtttgttatttgtggggccatcatatggaggagaacaagcaaggtcaaatatactttgcatatgg |
19199906 |
T |
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| Q |
516 |
taactggtttggatctcttgtgccttttggagaaag--ataggtattcttttcttcattgcagacttaacttta |
587 |
Q |
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| T |
19199907 |
tcactggtttggatctcttgtgccttttggagaaagatataggtattcttttcttcgttgcagacttaatttta |
19199980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 448 - 593
Target Start/End: Original strand, 19203598 - 19203744
Alignment:
| Q |
448 |
tgggtttgttatttgtggggccatcatttgaaggagaacaagcaaggttaaatatactttgcatatggtaactggtttggatctcttgtgccttttggag |
547 |
Q |
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| T |
19203598 |
tgggtttgttatttgtggggccatcatatggaggagaacaagcaaggttgaatatactttgcata-ggtaactggtttggatctcttgtgccttttggag |
19203696 |
T |
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| Q |
548 |
aaag--ataggtattcttttcttcattgcagacttaactttatacatt |
593 |
Q |
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| T |
19203697 |
aaagatataggtattcttttcttcgttgcagacttaactttatacatt |
19203744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 193 - 449
Target Start/End: Original strand, 19203268 - 19203523
Alignment:
| Q |
193 |
ttcatattcaatatttaatttattgtaaaataacgttgaaaaactagctttttcaatcttgttaccaccattaacatggtaaatattgtaacaataagca |
292 |
Q |
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| T |
19203268 |
ttcatattcaatattcaacttattgcaaactagccttgaaaaactagcttttccaatcttgttgccaccattatcatggtaaatattgtaacaacaagtt |
19203367 |
T |
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| Q |
293 |
agatatttatgactgcaatatatttgcaataca-tgtttatcatccaataagatttgtgagaagaaaattcagagcaactaacctcatttgagttcataa |
391 |
Q |
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| T |
19203368 |
agata--tgtgtctggcatgcatttgcaatgcattttttaccatccaataagatgcgtggaaagaaaattcagaacaactaacctcatctgagtccat-a |
19203464 |
T |
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| Q |
392 |
aattctccattctactgggagggttttattctcaggttttccttc--tatcacttatatg |
449 |
Q |
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| T |
19203465 |
aattctccattctactggtaggg-tttattctcaggtttttcttctatatcacttatatg |
19203523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 19203212 - 19203244
Alignment:
| Q |
134 |
agagaaaacatgagattttcaatggtgagattc |
166 |
Q |
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| T |
19203212 |
agagaaaacatgagattttcaatggagagattc |
19203244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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