View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_low_71 (Length: 236)
Name: NF14376_low_71
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_low_71 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 3300882 - 3301090
Alignment:
| Q |
21 |
atgttctttttatgtttctagtttagtactagtagataagataaacaatggcagnnnnnnnnnnnngaggatcgtgttctcattccttgtgttacagtac |
120 |
Q |
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| T |
3300882 |
atgttctttttatgtttctagtttagtactagtagataagataaacaatggcagttttttgtttttgaggatcgtgttctcattccttgtgttacagtac |
3300981 |
T |
|
| Q |
121 |
tatacaatacatcctcaacttctgtcaagagctacaacacttattgtttacattcnnnnnnnactatgtctttagcaagaacacgagaatatatggtata |
220 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3300982 |
tatacaatacatcctcaacttctgtcacgacctacaacacttattgtttacattctttttttactatgtctttagcaagaacacgagaatatatggtatg |
3301081 |
T |
|
| Q |
221 |
gtataattt |
229 |
Q |
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||||||||| |
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| T |
3301082 |
gtataattt |
3301090 |
T |
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