View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_low_73 (Length: 235)
Name: NF14376_low_73
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_low_73 |
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Alignment Details
Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 61 - 217
Target Start/End: Original strand, 12700768 - 12700922
Alignment:
| Q |
61 |
ttggcctaacactatgcctgttgttgctggttctgttttgctttctaggctttctagcttcnnnnnnnnnctttctgtttttgtgctgcattttcctcct |
160 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12700768 |
ttggcctaacattatgcctgttgttgctggttctgttttgctctctaggctttctagctt--ttttttttctttctgtttttgtgctgcattttcctcct |
12700865 |
T |
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| Q |
161 |
gctgttggtacatgtatttgtttaaattcaatttgctgctgtttttgtgctccagat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
12700866 |
gctgttggtacatgtatttgtttaaattcaatttgctcctgtttttgtgctccagat |
12700922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 61 - 217
Target Start/End: Original strand, 19753505 - 19753659
Alignment:
| Q |
61 |
ttggcctaacactatgcctgttgttgctggttctgttttgctttctaggctttctagcttcnnnnnnnnnctttctgtttttgtgctgcattttcctcct |
160 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||| |||||||||||||||||||||||||||| | |
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| T |
19753505 |
ttggcctaacactatgcctgttgttgctggttctgttttgctctttagactttctagctt--ttttttttctttctgtttttgtgctgcattttcctcat |
19753602 |
T |
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| Q |
161 |
gctgttggtacatgtatttgtttaaattcaatttgctgctgtttttgtgctccagat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19753603 |
gctgttggtacatgtatttgtttaaattcaatttgctgctgtttttgtgctccagat |
19753659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 35967898 - 35967842
Alignment:
| Q |
61 |
ttggcctaacactatgcctgttgttgctggttctgttttgctttctaggctttctag |
117 |
Q |
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||||||||||| ||||| |||||||||||||| ||||| ||||||||| |||||| |
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| T |
35967898 |
ttggcctaacaggttgcctattgttgctggttctattttggtttctaggcattctag |
35967842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 61 - 214
Target Start/End: Complemental strand, 23169536 - 23169385
Alignment:
| Q |
61 |
ttggcctaacactatgcctgttgttgctggttctgttttgctttctaggctttctagcttcnnnnnnnnnctttctgtttttgtgctgcattttcctcct |
160 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
23169536 |
ttggcctaatactatgcctgttgttgctggttctgttttgctctctaggcattctagctttttttttttc--ttctgtttttgtgctgcattttcctcct |
23169439 |
T |
|
| Q |
161 |
gctgttggtacatgtatttgtttaaattcaatttgctgctgtttttgtgctcca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23169438 |
gctgttggtacatgtatttgtttaaattcaatttgctgctgtttttgtgctcca |
23169385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 41740534 - 41740590
Alignment:
| Q |
61 |
ttggcctaacactatgcctgttgttgctggttctgttttgctttctaggctttctag |
117 |
Q |
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||||||||||| ||||| |||||||||||||| ||||| ||||||||| |||||| |
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| T |
41740534 |
ttggcctaacaggttgcctattgttgctggttctattttgatttctaggcattctag |
41740590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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