View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14376_low_74 (Length: 233)

Name: NF14376_low_74
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14376_low_74
NF14376_low_74
[»] chr6 (15 HSPs)
chr6 (9-205)||(2974544-2974740)
chr6 (7-220)||(2996703-2996916)
chr6 (7-219)||(2935134-2935349)
chr6 (7-206)||(2937995-2938194)
chr6 (10-211)||(2983404-2983605)
chr6 (7-220)||(2929844-2930059)
chr6 (7-181)||(2927695-2927869)
chr6 (7-164)||(3003174-3003327)
chr6 (56-220)||(2965111-2965280)
chr6 (49-206)||(2658311-2658474)
chr6 (6-164)||(2952470-2952624)
chr6 (116-220)||(2954726-2954829)
chr6 (161-212)||(2986421-2986472)
chr6 (7-52)||(2954676-2954721)
chr6 (173-205)||(2952657-2952689)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-219)||(34573-34791)
[»] chr7 (1 HSPs)
chr7 (7-219)||(3339560-3339775)
[»] chr3 (2 HSPs)
chr3 (24-163)||(49618963-49619102)
chr3 (25-164)||(49613989-49614128)


Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 9 - 205
Target Start/End: Original strand, 2974544 - 2974740
Alignment:
Q  9 aatgcttattgtaggaatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatct 108  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2974544 aatgcttattgtaggaatccttggcataggttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaattt 2974643  T
Q  109 tactgcttgttctcactataattcaaacagtttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcataattatt 205  Q
    | || |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2974644 ttctacttgttctcactataattcaaagagtttgttctgtcttgcaagtagtacaagcatcctagtgatttctttcattgttgagttcataattatt 2974740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 7 - 220
Target Start/End: Complemental strand, 2996916 - 2996703
Alignment:
Q  7 taaatgcttattgtaggaatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaat 106  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||| |||| |||||||||||  ||||||||||| ||||||||||    
T  2996916 taaatgctttttgtaggaatccttggcataagttgaaggctactctcaggcgtgattatggcaagactccttggcaagctgctgcttcctttgctggaat 2996817  T
Q  107 cttactgcttgttctcactataattcaaacagtttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcataattattg 206  Q
      |||| |||||||||||| | |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2996816 tgtactacttgttctcacttttattcaatcagtttgttctgtcttgcaagttgtacaagcctcctagtgatttctttcattgttgagttcataattattg 2996717  T
Q  207 ctattagtattatc 220  Q
    ||||||||||||||    
T  2996716 ctattagtattatc 2996703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 2935134 - 2935349
Alignment:
Q  7 taaatgcttattgtaggaatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaat 106  Q
    ||||||||| ||||| ||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  2935134 taaatgctttttgtaagaatccttggcataagttgaaggctactctcaggcgtgattattgcaaaactccttggcaaactgctgcttccattgctggaat 2935233  T
Q  107 cttactgcttgttctcactataattcaaacagtttgttctgtcttgcaagtagt---acaagcctcctagtgatttctttcattgttgagttcataatta 203  Q
    |||||| ||| |||||||| || ||||| |||||||||||||||||||||| ||   |||||||||||||||||||||||||||||||||||||||||||    
T  2935234 cttactactttttctcactttacttcaatcagtttgttctgtcttgcaagttgtacaacaagcctcctagtgatttctttcattgttgagttcataatta 2935333  T
Q  204 ttgctattagtattat 219  Q
    || |||||||||||||    
T  2935334 tttctattagtattat 2935349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 2937995 - 2938194
Alignment:
Q  7 taaatgcttattgtaggaatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaat 106  Q
    |||||||||  || || |||||||||||||||||||||||| |||| |||||||||||| |||| ||||||||||| |||||||||||||||||||||||    
T  2937995 taaatgctttctgcagtaatccttggcataagttgaaggctactctgaggcgtgattatggcaaaactccttggcaaactgctgcttccattgctggaat 2938094  T
Q  107 cttactgcttgttctcactataattcaaacagtttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcataattattg 206  Q
    |||||| ||| |||||||| || ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2938095 cttactacttattctcactttacttcaatcagtttgttctgtcttgcaagttgtacaagcctcctagtgatttctttcattgttgagttcataattattg 2938194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 2983404 - 2983605
Alignment:
Q  10 atgcttattgtaggaatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatctt 109  Q
    |||||| |||||  |||||| || |||||||||||||  |||| |||||||||||| |||||||||||||| | | |||||||||| |||||||| ||||    
T  2983404 atgctttttgtaataatcctaggaataagttgaaggccactctcaggcgtgattatggcaatactccttggaaaattgctgcttccgttgctggagtctt 2983503  T
Q  110 actgcttgttctcactataattcaaacagtttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcataattattgcta 209  Q
    ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||| ||    
T  2983504 actacttgttctcactataattcaaacagtttgttctgtcttgcaaatagtacaagcatcctagtcatttctttcattgttgagttcataattattgtta 2983603  T
Q  210 tt 211  Q
    ||    
T  2983604 tt 2983605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 7 - 220
Target Start/End: Original strand, 2929844 - 2930059
Alignment:
Q  7 taaatgcttattgtaggaatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaat 106  Q
    ||||||||| ||||  |||||||||||||| |||||||||| |||| |||||||||||||| | |||||||||||| ||||||||||||||||||||| |    
T  2929844 taaatgctttttgttagaatccttggcataggttgaaggctactctcaggcgtgattattgaagtactccttggcaaactgctgcttccattgctggatt 2929943  T
Q  107 cttactgcttgttctcactataattcaaacagtttgttctgtcttgcaagtagtacaagcctcctag--tgatttctttcattgttgagttcataattat 204  Q
    |||||| ||| |||||||| || ||||| |||||||||||||||||||||| |||||||||||||||  |||||||||| ||||||||||||||||||||    
T  2929944 cttactactttttctcactttacttcaatcagtttgttctgtcttgcaagttgtacaagcctcctagcttgatttcttttattgttgagttcataattat 2930043  T
Q  205 tgctattagtattatc 220  Q
    || ||||  |||||||    
T  2930044 tgttattcttattatc 2930059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 7 - 181
Target Start/End: Original strand, 2927695 - 2927869
Alignment:
Q  7 taaatgcttattgtaggaatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaat 106  Q
    ||||||||||||||| ||||||  | ||||||||||||||| |||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||    
T  2927695 taaatgcttattgtaagaatccacgacataagttgaaggctactctcaggcgtgattattgcaaaactccttggcaaactgctgcttccattgcgggaat 2927794  T
Q  107 cttactgcttgttctcactataattcaaacagtttgttctgtcttgcaagtagtacaagcctcctagtgatttct 181  Q
    |||||| |||||||||||| || ||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  2927795 cttactacttgttctcactttacttcaatcagtttgttctgtcttgcaagttgtacaagcctcctagtgatttct 2927869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 3003327 - 3003174
Alignment:
Q  7 taaatgcttattgtaggaatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaat 106  Q
    ||||||||||||||| |||||| |||||||||||||||||| |||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  3003327 taaatgcttattgtaagaatccatggcataagttgaaggctactctcaggcgtgattattgcaaaactccctggcaaactgctgcttccattgctggaat 3003228  T
Q  107 cttactgcttgttctcactataattcaaacagtttgttctgtcttgcaagtagtacaa 164  Q
    |||||| |||| ||||||| || ||||||||||||||    |||||||||||||||||    
T  3003227 cttactccttgctctcactttacttcaaacagtttgt----tcttgcaagtagtacaa 3003174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 56 - 220
Target Start/End: Original strand, 2965111 - 2965280
Alignment:
Q  56 gcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgttctcactataattcaaacagtttgttctgtcttgcaa 155  Q
    ||||||||| |||| ||||||||||||  ||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||    ||||||||    
T  2965111 gcgtgattactgcagtactccttggcaagctgctgcttcctttgctggaatcttactacttgttctcactttaattcaaacagtttgt----tcttgcaa 2965206  T
Q  156 gtagtacaa---------gcctcctagtgatttctttcattgttgagttcataattattgctattagtattatc 220  Q
    |||||||||         || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2965207 gtagtacaacaacctaatgcttcctagtgatttctttcattgttgagttcataattattgctattagtattatc 2965280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 49 - 206
Target Start/End: Complemental strand, 2658474 - 2658311
Alignment:
Q  49 ctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgttctcactataattcaaacagtttgttctgt 148  Q
    |||| |||||||||||||||| |||||||||| |  ||| ||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  2658474 ctctgaggcgtgattattgcagtactccttggaaagctggtgcttcctttgctggaatcttactacttattctcactataattcaaacagtttgttctgt 2658375  T
Q  149 cttgcaagtagtacaa------gcctcctagtgatttctttcattgttgagttcataattattg 206  Q
    ||| ||||||||||||      | ||||||||||||||||||||||||  ||||||||||||||    
T  2658374 ctttcaagtagtacaacctaatggctcctagtgatttctttcattgttcggttcataattattg 2658311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 164
Target Start/End: Original strand, 2952470 - 2952624
Alignment:
Q  6 ataaatgcttattgtaggaatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaa 105  Q
    |||||||| | |||||| ||||||||| |||||||||| ||  |||| |||||||||||| |||| ||||||||||| ||||||||||||||||||||||    
T  2952470 ataaatgcattttgtagtaatccttggaataagttgaaagccactctgaggcgtgattatggcaaaactccttggcaaactgctgcttccattgctggaa 2952569  T
Q  106 tcttactgcttgttctcactataattcaaacagtttgttctgtcttgcaagtagtacaa 164  Q
    || |||| |||| ||||||| || ||||||||||||||    |||||||||||||||||    
T  2952570 tcgtactccttgctctcactttacttcaaacagtttgt----tcttgcaagtagtacaa 2952624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 2954726 - 2954829
Alignment:
Q  116 tgttctcactataattcaaacagtttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcataattattgctattagta 215  Q
    |||| ||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  2954726 tgttatcactttacttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcaatgttgagttcat-attattgctattagta 2954824  T
Q  216 ttatc 220  Q
    |||||    
T  2954825 ttatc 2954829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 2986421 - 2986472
Alignment:
Q  161 acaagcctcctagtgatttctttcattgttgagttcataattattgctatta 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2986421 acaagcctcctagtgatttctttcattgttgagttcataattattgttatta 2986472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 2954676 - 2954721
Alignment:
Q  7 taaatgcttattgtaggaatccttggcataagttgaaggctgctct 52  Q
    ||||||||| ||||||||||||||||| ||||||||||||| ||||    
T  2954676 taaatgctttttgtaggaatccttggcgtaagttgaaggctactct 2954721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 2952657 - 2952689
Alignment:
Q  173 gtgatttctttcattgttgagttcataattatt 205  Q
    |||||||||||||||||||||||||||||||||    
T  2952657 gtgatttctttcattgttgagttcataattatt 2952689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 34791 - 34573
Alignment:
Q  1 aaaacataaatgcttattgtaggaatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgc 100  Q
    ||||| ||||||| | |||||| ||||||||| ||| |||||||||| |||| |||||||||||| |||| ||||||||||| |||||||||||| ||||    
T  34791 aaaacttaaatgcattttgtagtaatccttggaataggttgaaggcttctctcaggcgtgattatggcaaaactccttggcaaactgctgcttccgttgc 34692  T
Q  101 tggaatcttactgcttgttctcactataattcaaacagtttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcataa 200  Q
    |||||| ||||| |||||||||||| |  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34691 tggaattttactacttgttctcactttgcttcaatcagtttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcataa 34592  T
Q  201 ttattgctattagtattat 219  Q
    |||||||||||||||||||    
T  34591 ttattgctattagtattat 34573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 3339560 - 3339775
Alignment:
Q  7 taaatgcttattgtaggaatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaat 106  Q
    |||||| || ||||| |||||||||||||| |||||||||  |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3339560 taaatgatttttgtaagaatccttggcataggttgaaggccactctcaggcgtgattattgcaatactccttggcaaactgctgcttccattgctggaat 3339659  T
Q  107 cttactgcttgttctcactataattcaaacagtttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagt---tcataatta 203  Q
      |||| |||||||||||| || ||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||   |||||||||    
T  3339660 tgtactacttgttctcactttacttcaatcagtttgttctgtcttgcaagtagtacaggcctcctagtgatttctttctttgttgagttcatcataatta 3339759  T
Q  204 ttgctattagtattat 219  Q
    ||||| ||||||||||    
T  3339760 ttgctcttagtattat 3339775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 163
Target Start/End: Original strand, 49618963 - 49619102
Alignment:
Q  24 aatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgttctca 123  Q
    ||||||||||||||  |||||||| |||| |||||||||||| ||| |||||||||||| ||||||||||||||||||||||| ||||| |||||||||     
T  49618963 aatccttggcataaactgaaggctactctcaggcgtgattatggcagtactccttggcaaactgctgcttccattgctggaattttactacttgttctct 49619062  T
Q  124 ctataattcaaacagtttgttctgtcttgcaagtagtaca 163  Q
    || || ||||| ||||||||||| |||||||||| |||||    
T  49619063 ctttacttcaatcagtttgttctatcttgcaagttgtaca 49619102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 164
Target Start/End: Original strand, 49613989 - 49614128
Alignment:
Q  25 atccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgttctcac 124  Q
    ||||||||||||  ||||||||  |||| || |||||||||||||| | ||||||||| ||||||||||||||||||||||| ||||| ||| ||||| |    
T  49613989 atccttggcatagattgaaggcgactctcagacgtgattattgcaacagtccttggcaaactgctgcttccattgctggaattttactacttattctctc 49614088  T
Q  125 tataattcaaacagtttgttctgtcttgcaagtagtacaa 164  Q
    | || ||||| |||||||| | || |||||||| ||||||    
T  49614089 tttacttcaatcagtttgtgcagtgttgcaagttgtacaa 49614128  T

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