View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14376_low_8 (Length: 608)
Name: NF14376_low_8
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 31 - 598
Target Start/End: Complemental strand, 2303000 - 2302433
Alignment:
| Q |
31 |
aatattgcataggagttggtggctatggtagtgtttataaagcaaatctacctagtggtagagtagtggcattgaagaaactccacaatttagaagctaa |
130 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2303000 |
aatattgcataggcgttggtggttatggtagtgtttataaagcaaatctacctagtggtagagtagtggcattgaagaaactccacaatttagaagctaa |
2302901 |
T |
|
| Q |
131 |
tgaaccattgattagaaagattttcaagaatgaggtgagaatgttgacaaagataaggcatagaaatattttgaaactttatggtttttgcttgcacaat |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2302900 |
tgaaccattgattagaaagattttcaagaatgaggtgagaatgttgacaaagataaggcatagaaatattttgaagctttatggtttttgcttgcacaat |
2302801 |
T |
|
| Q |
231 |
agatgcatgttcttggttttggaatatatggaaaagggaagcttgtattgtgttctacacaatgatgttgaagcagtggaattggattggtgtaaaaggg |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2302800 |
agatgcatgttcttggttttggaatatatggaaaagggaagcttgtattgtgttctacgcaatgatgttgaagcagtggaattggattggtgtaaaaggg |
2302701 |
T |
|
| Q |
331 |
ttgagattgtgaaaggaattgcaaatagcttatcttaccttcattatgattgcaagccagcaattattcacagagatgttactaccaaaaatgttctctt |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2302700 |
ttgagattgtgaaaggaattgcaaatagcttatcttaccttcattatgattgcgagccagcaattattcacagagatgtgactaccaaaaatgttctctt |
2302601 |
T |
|
| Q |
431 |
gaactcagaaatggaagcttgtctttctgattttggcatagctagacttcgaaattctagttcgtcgaaccggacagtacttgcaggcacatatggatat |
530 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2302600 |
gaactcagaaatggaagcttgtctttctgattttggcatagctagacttcgaaattctagttcgtcgaaccggacagtccttgcaggcacatatggatat |
2302501 |
T |
|
| Q |
531 |
attgcaccaggtgatcttttttatatgttaattgttggaaattccttcttaaatgtagtctgcctttg |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2302500 |
attgcaccaggtgatcttttttatatgttaattgttggaaattccttcttaaatgtagtctgcctttg |
2302433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University