View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_low_82 (Length: 210)
Name: NF14376_low_82
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_low_82 |
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| [»] scaffold0117 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 888247 - 888053
Alignment:
| Q |
1 |
ctataactataagcagaatgcacagagaaaattagttaagatagtcgtaacataaatttggagtatcttctcacaatatatgcgtgtcatatcttgattc |
100 |
Q |
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| T |
888247 |
ctataactataagcagaatgcacagagaaaattagttaagatagtcgtaacataaatttggagtatcttctcacaatatatgcgtgtcatatcttgattc |
888148 |
T |
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| Q |
101 |
gatatccaaaatcgatgcacacattgtaaatcaaatggttatgttattttggatacgagtctcattttgaatcttgattccttttgatgattcat |
195 |
Q |
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| T |
888147 |
gatatccaaaatcgatgcacacattgtaaatcaaatggttatgttattttggatacgagtctcattttgaatcttgattccttttgatgattcat |
888053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 195
Target Start/End: Original strand, 1002916 - 1003034
Alignment:
| Q |
71 |
tcacaatatatgcgtgtcatatcttgattcgatatccaaaatcgatgcacacattgtaaatcaaatggttatgttattttggatacgagtctcattttga |
170 |
Q |
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| T |
1002916 |
tcacgatatatgtgagtcgtaacttgattcgatattcaaaatcgat--acacattttaaatgaaatggttttgttat----gatatgaatatcattttga |
1003009 |
T |
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| Q |
171 |
atcttgattccttttgatgattcat |
195 |
Q |
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| T |
1003010 |
atcttgattccttttaatgaatcat |
1003034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 16562 - 16616
Alignment:
| Q |
1 |
ctataactataagcagaatgcac--agagaaaattagttaagatagtcgtaacat |
53 |
Q |
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| T |
16562 |
ctataactataagcagaatgcacatagagaaagttacttaagatagtcataacat |
16616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 48301349 - 48301392
Alignment:
| Q |
1 |
ctataactataagcagaatgcacagagaaaattagttaagatag |
44 |
Q |
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|||| |||||||||||| ||| |||||||||||||||||||||| |
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| T |
48301349 |
ctatgactataagcagactgcgcagagaaaattagttaagatag |
48301392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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