View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_low_83 (Length: 205)
Name: NF14376_low_83
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_low_83 |
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| [»] scaffold0117 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 888355 - 888526
Alignment:
| Q |
16 |
atgaaccaatttgtgacagtcctttcttgtaccatgatcatcaaatgtggcaaaatcaggtagtgatatacatattactgcatcgtgttacgactcgcat |
115 |
Q |
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| T |
888355 |
atgaaccaatttgtgacagtcctttcttgtaccatgatcatcaaatgtggcaaaatcaggtagtgatatacatattactgcatcgtgttacgactcgcat |
888454 |
T |
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| Q |
116 |
atatcgtgagatagcgatgaccatagttataactactaaatgactaagaacacatatatgatagcattgtag |
187 |
Q |
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| T |
888455 |
atatcgtgagatagcgatgaccatagttataactactaaatgactaagaacacatatatgatagcattgtag |
888526 |
T |
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Target: chr6; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 1002938 - 1002852
Alignment:
| Q |
102 |
gttacgactcgcatatatcgtgagatagcgatgaccatagttataactactaaatgactaagaacacat-atatgatagcattgtag |
187 |
Q |
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| T |
1002938 |
gttacgactcacatatatcgtgacagagcgacgaccatagttataactactaaatgactaagaacacataatacgatagcattgtag |
1002852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 496098 - 496177
Alignment:
| Q |
18 |
gaaccaatttgtgacagtcctttcttgtaccatgatcatcaaatgtggcaaaatcaggtagtgatatacatattactgcatc |
99 |
Q |
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| T |
496098 |
gaaccgatttgtgacagtcctttcgtgtactatgatcaccacatgtggcaaaatcagttagtg--atacatattactgcatc |
496177 |
T |
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Target: scaffold0117 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 16451 - 16373
Alignment:
| Q |
16 |
atgaaccaatttgtgacagtcctttcttgtaccatgatcatcaaatgtggcaaaatcaggtagtgatatacatattact |
94 |
Q |
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| T |
16451 |
atgaaccaatttgtgacagtcctttcttgtaccatgatcatcacatgtggcaaaatcaggtagtaatatacatattact |
16373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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