View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14376_low_9 (Length: 569)
Name: NF14376_low_9
Description: NF14376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14376_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 38010113 - 38009844
Alignment:
| Q |
18 |
gtctcgaacgttaatcaaaattggacggttcaaattgcgcactaacaaaatcaattgcaaactatttcggctgccaattccaaagcaaataactaagctg |
117 |
Q |
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| T |
38010113 |
gtctcgaccgttaatcaaaattggacggttcaaattgcacacaaacaaaatcaattgcaaactatttcggctgccaattccaaagcaaataactaagctg |
38010014 |
T |
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| Q |
118 |
aataactgtgtgacactgtctaatccaaatttgtatcttttgagttgtacttatggagcaatgtatctttaatcttggggttatctctatttttcatggt |
217 |
Q |
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| T |
38010013 |
aataactgtg--acactgtctaatccaaatttgtatcttttgagttgtacttatggagcaatgtatgtttaatcttggggttatctctatttttcatagt |
38009916 |
T |
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| Q |
218 |
agaaaccaaataataatgcgaatgcattcgtattagttattattttcgaaaataaaaggttccacttgcaga |
289 |
Q |
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| T |
38009915 |
agaaaccaaataataatgtgaatgcattcgtattagttattattttcgaaaataaaaggttccacttgcaga |
38009844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 459 - 562
Target Start/End: Complemental strand, 38009841 - 38009738
Alignment:
| Q |
459 |
gacctgaagagaatgagcagagaactcaaatgtccaatctggtatgaatcacctattcaattatccnnnnnnnccctctttctctattgctattcccttt |
558 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
38009841 |
gacccgaagagaatgggcagagaactcaaatgtccaatctggtatgaatcacctattcaattatccttttttttcctctttctctattgctattcctttt |
38009742 |
T |
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| Q |
559 |
gcta |
562 |
Q |
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|||| |
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| T |
38009741 |
gcta |
38009738 |
T |
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