View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14377_high_1 (Length: 594)
Name: NF14377_high_1
Description: NF14377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14377_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 18 - 578
Target Start/End: Complemental strand, 43385756 - 43385198
Alignment:
| Q |
18 |
ataagcacctgtgagactgtttggaagaacttgtgacatcttcattggcgttttcagtttatttccatatgttctccaggacagatataagctataaata |
117 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43385756 |
ataagcacctgtgagactgtttggaagaacttgtaacatcttcattggcgttttcagtttatttccatatgttctccaggacagatataagctataaata |
43385657 |
T |
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| Q |
118 |
ggtcatttatgctataagctgttaattaagctggttatccaaacagggacttatttatatacccctacattgtcactatagtatagcaattagtttagcg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43385656 |
ggtcatttatgctataagctgttaattaagctggttatccaaacagggacttatttatatacccctacattgtcactatagtatagcaattagtttagcg |
43385557 |
T |
|
| Q |
218 |
atgaaaactacctccttctagaactttcttctgaattcgtttgacgtgacgaagattttcgagcggcgctatctgattcaaacgcctaacaagaaattaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43385556 |
atgaaaactacctccttctagaactttcttctgaattcgtttgacgtgacgaagattttcgagcggcgctatctgattcaaacgcctaacaagaaattaa |
43385457 |
T |
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| Q |
318 |
aacatagagattagttgacaaagcacagagagttcatagaaagtaagatctgaaacgaagctaacctaacaatttggttggcatgctttggatcgataga |
417 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43385456 |
aac--agagattagttgacaaagcacagagagttcatagaaagtaagatttgaaacgaagctaacctaacaatttggttggcatgctttggatcgataga |
43385359 |
T |
|
| Q |
418 |
tgaagcaaaaacactaactgcataaaacagaaacaaacgaaaaaccacagtttcaagtcaagaaattctaaatggaaaaaacgttttagaattttgaagt |
517 |
Q |
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| T |
43385358 |
tgaagcaaaaacactaactgcataaaacagaaacaaacgaaaaaccacagtttcaagtcaagaaattctaaatggaaaaaacgttttagaattttgaagt |
43385259 |
T |
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| Q |
518 |
gaaaggttaagataatgttgaccagtaggttgattgtgaaggtcgtgtggctcctcgtctg |
578 |
Q |
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| T |
43385258 |
gaaaggttaagataatgttgaccagtaggttgattgtgaaggtcgtgtggctcctcgtctg |
43385198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 6593218 - 6593177
Alignment:
| Q |
124 |
ttatgctataagctgttaattaagctggttatccaaacaggg |
165 |
Q |
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| T |
6593218 |
ttatgctataagctgtaaattaagttgtttatccaaacaggg |
6593177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 30291180 - 30291140
Alignment:
| Q |
123 |
tttatgctataagctgttaattaagctggttatccaaacag |
163 |
Q |
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| T |
30291180 |
tttatgctataagctgcaaattaagttggttatccaaacag |
30291140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 38033981 - 38034009
Alignment:
| Q |
18 |
ataagcacctgtgagactgtttggaagaa |
46 |
Q |
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| T |
38033981 |
ataagcacctgtgagactgtttggaagaa |
38034009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 163
Target Start/End: Complemental strand, 29388271 - 29388230
Alignment:
| Q |
122 |
atttatgctataagctgttaattaagctggttatccaaacag |
163 |
Q |
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|||||||||||||| ||| |||||||||| |||||||||||| |
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| T |
29388271 |
atttatgctataagatgtcaattaagctgtttatccaaacag |
29388230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 5752751 - 5752792
Alignment:
| Q |
124 |
ttatgctataagctgttaattaagctggttatccaaacaggg |
165 |
Q |
| |
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||||||||||||| |||||||||| || |||||||||||||| |
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| T |
5752751 |
ttatgctataagcagttaattaagttgtttatccaaacaggg |
5752792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 40758942 - 40758901
Alignment:
| Q |
124 |
ttatgctataagctgttaattaagctggttatccaaacaggg |
165 |
Q |
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| T |
40758942 |
ttatgctataagctgcaaattaagctggttattcaaacaggg |
40758901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 34672901 - 34672941
Alignment:
| Q |
124 |
ttatgctataagctgttaattaagctggttatccaaacagg |
164 |
Q |
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||||||||||||||| |||||||||| ||||||||||||| |
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| T |
34672901 |
ttatgctataagctgaaaattaagctgtttatccaaacagg |
34672941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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