View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14377_low_2 (Length: 454)
Name: NF14377_low_2
Description: NF14377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14377_low_2 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 107 - 454
Target Start/End: Complemental strand, 31008730 - 31008383
Alignment:
| Q |
107 |
ggtaaatatgagggtgatagatagaactttgagatggcctaattagcttaggaaaaggtgatatggcttagtggagaggcaacttatcaaagtgcgctac |
206 |
Q |
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| T |
31008730 |
ggtaaatatgagggtgatagatagaactttgagatggcctaattagcttaggaaaaggtgatatggcttagtggagaggcaacttatcaaagtgcgctac |
31008631 |
T |
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| Q |
207 |
cacattcttctatgtgtaaaagtcaaacaaatagcctatgacttgtttggtatgtttctaaaaatgatgttgacttttaagatggacacaaaaaggagta |
306 |
Q |
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| T |
31008630 |
cacattcttctatgtgtaaaagtcaaacaaatagcctatgacttgtttggtatgtttctaaaaatgatgttgacttttaagatggacacaaaaaggagta |
31008531 |
T |
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| Q |
307 |
gtttattttactattaaattttgattttgcaaccatatatatctgcatatcaagtatggtttctttctaggtttccaaacaccatctaatttaatttgat |
406 |
Q |
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| T |
31008530 |
gtttattttactattaaattttgattttgcaaccatatatatctgcatatcaagtatggtttctttctaggtttccaaacaccatctaatttaattttat |
31008431 |
T |
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| Q |
407 |
ataacagattagtcctttttctcttatttcccttacaattcaccttat |
454 |
Q |
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| T |
31008430 |
ataacttattagtccattttctcttatttcccttacaattcaccttat |
31008383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 30976600 - 30976544
Alignment:
| Q |
243 |
tatgacttgtttggtatgtttctaaaaatgatgttgacttttaagatggacacaaaa |
299 |
Q |
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| T |
30976600 |
tatgacttgtttggtatctttgtaaaattggtgttgacttttaagatggacaaaaaa |
30976544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 30983039 - 30982983
Alignment:
| Q |
243 |
tatgacttgtttggtatgtttctaaaaatgatgttgacttttaagatggacacaaaa |
299 |
Q |
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| T |
30983039 |
tatgacttgtttggtatctttgtaaaattggtgttgacttttaagatggacaaaaaa |
30982983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 30989203 - 30989147
Alignment:
| Q |
243 |
tatgacttgtttggtatgtttctaaaaatgatgttgacttttaagatggacacaaaa |
299 |
Q |
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| T |
30989203 |
tatgacttgtttggtatctttgtaaaattggtgttgacttttaagatggacaaaaaa |
30989147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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