View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14377_low_3 (Length: 411)
Name: NF14377_low_3
Description: NF14377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14377_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Complemental strand, 2458826 - 2458445
Alignment:
| Q |
18 |
acaccggacatgaaactgacacagaaacaaggataccgataattatttggaagaaaaaa--tagtcataattgaaagtcttcaactggaagtatcattgc |
115 |
Q |
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| T |
2458826 |
acaccggacatgaaactgacacagacacaaggataccaataattatttggaagaaaaaaaatagtcataattgaaagtcttcaactagaagtatcattgc |
2458727 |
T |
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| Q |
116 |
tacatagataacatgtaactcacacataaacatgaactatggtctgcaacacactcaaactaacttaactgattctgttactgttaagtctcttacaaaa |
215 |
Q |
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| T |
2458726 |
tacatagataacatgtaactcacacataaacatgaactatggtctgcaacacacttaaactaacttaactgattctgttaccgttaagtctcttacaaaa |
2458627 |
T |
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| Q |
216 |
ggtgaaataaaaacgcatcattcattttcctagaaagtggaatgaatagcttaacnnnnnnnttgaaagcttagaaaaaagtacccctgtagatgtggaa |
315 |
Q |
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| T |
2458626 |
ggtgaaataaaaacgcatcattcattttcctagaaagtggaatgaatagcttaacaaaaaaattgaaagcttagaaaaaagtacccctgtaaatgtggaa |
2458527 |
T |
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| Q |
316 |
agggaccttcagaatcaatcacaacacaaactaggaaatgtttccactttaagtcggcttaaataaaaaataattgtttcat |
397 |
Q |
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| T |
2458526 |
agggaccttcagaatcaatcacaacacaaactaggaaatgtttccactttaagtcggcttaaataaaaaataattgtttcat |
2458445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 372
Target Start/End: Complemental strand, 2447592 - 2447529
Alignment:
| Q |
306 |
agatgtggaaagggaccttcagaatcaatcacaacacaaactaggaaatgtttccactttaagtcgg |
372 |
Q |
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| T |
2447592 |
agatgtagaaagcgatcgtcagaatcaatcaca---caaactaggaaatgtttccactttaagtcgg |
2447529 |
T |
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