View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14377_low_6 (Length: 227)
Name: NF14377_low_6
Description: NF14377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14377_low_6 |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 9677930 - 9677709
Alignment:
| Q |
7 |
attcgatatctatcaacaaaatacatgactttgataacattattaaacagaatgttgttctattgtcaacaattctgctcttgcaaaca-gttttggagc |
105 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
9677930 |
attcgatatctattaacaaaatacatgactttgataacattattaaacagaatgttgttctattgtcaacaattctgctcttgcaaacaaggtttggagc |
9677831 |
T |
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| Q |
106 |
tgacttttagaacttcacaccatgtgtccattctcttttcttaaataaaacaaaggctgggtctaatgccatcataacaaatttgtttgatggtgtaaac |
205 |
Q |
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| T |
9677830 |
tgacttttagaacttcacaccatgtgtccattctcttttcttaaataaaacaaaggctgggtctaatgccatcataacaaatttgtttgatggtgtaaac |
9677731 |
T |
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| Q |
206 |
tttggcaataaaatgcaaatat |
227 |
Q |
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|||||||||||||||||||||| |
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| T |
9677730 |
tttggcaataaaatgcaaatat |
9677709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 77 - 175
Target Start/End: Complemental strand, 9660750 - 9660651
Alignment:
| Q |
77 |
aattctgctcttgcaaaca-gttttggagctgacttttagaacttcacaccatgtgtccattctcttttcttaaataaaacaaaggctgggtctaatgcc |
175 |
Q |
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|||||||||||||||| || | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
9660750 |
aattctgctcttgcaagcaaggtttggagctgacttttagaacttcacaccatgtgtccgttctcttttcttaaataaaacaaaggatgggtctaatgcc |
9660651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 12107268 - 12107191
Alignment:
| Q |
44 |
cattattaaacagaatgttgttctattgtcaacaattctgctcttgcaaac-agttttggagctgacttttagaactt |
120 |
Q |
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| T |
12107268 |
cattattaaacaaaatgttgtactattgtcaacaattctgctcttgcaagcaaggtttgaagcttacttttagaactt |
12107191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 9660861 - 9660821
Alignment:
| Q |
7 |
attcgatatctatcaacaaaatacatgactttgataacatt |
47 |
Q |
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| T |
9660861 |
attcgatatctatcaacaaaatacatgactttgataacatt |
9660821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 99 - 201
Target Start/End: Original strand, 10102258 - 10102353
Alignment:
| Q |
99 |
ttggagctgacttttagaacttcacaccatgtgtccattctcttttcttaaataaaacaaaggctgggtctaatgccatcataacaaatttgtttgatgg |
198 |
Q |
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| T |
10102258 |
ttggagatgacttttagaacttcattccatgtgtccattctcttttc----ctaaaacaaaggttgggtgtaatgc---cataacagatttgattgatgg |
10102350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 9676428 - 9676388
Alignment:
| Q |
7 |
attcgatatctatcaacaaaatacatgactttgataacatt |
47 |
Q |
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| T |
9676428 |
attcgatatctatcaacaaaatacatgattttgataacatt |
9676388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 12106413 - 12106377
Alignment:
| Q |
108 |
acttttagaacttcacaccatgtgtccattctctttt |
144 |
Q |
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| T |
12106413 |
acttttagaacttcacaccatgtgtccattctctttt |
12106377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 12107380 - 12107340
Alignment:
| Q |
7 |
attcgatatctatcaacaaaatacatgactttgataacatt |
47 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| |
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| T |
12107380 |
attcgatatctatcaacaaaatacatgactttgatatcatt |
12107340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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