View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14378_high_4 (Length: 302)

Name: NF14378_high_4
Description: NF14378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14378_high_4
NF14378_high_4
[»] chr5 (1 HSPs)
chr5 (1-302)||(18722501-18722802)


Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 18722802 - 18722501
Alignment:
Q  1 caacagctcctccaccgatatctttgcttctccccattgaactcgaatagaatgaccttccaacaggtatacatttctcagtcggactttccctcaaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18722802 caacagctcctccaccgatatctttgcttctccccattgaactcgaatagaatgaccttccaacaggtatacatttctcagtcggactttccctcaaaac 18722703  T
Q  101 tacatccaaagcatgtagataatcctgcggaagcggaatcccttcatcaccttctttgctcaagtaattagtcaaccccttcccgtcaatcttcgagact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18722702 tacatccaaagcatgtagataatcctgcggaagcggaatcccttcatcaccttctttgctcaagtaattagtcaaccccttcccgtcaatcttcgagact 18722603  T
Q  201 agtttgatatttatccgaaaaagtttatgctgttcacgtttctcataaggtgatgtcgatttgctagtcgggatcgggaggcttatgtagaactcaagct 300  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18722602 agtttgatatttatccgaaaaagtttatgttgttcacgtttctcataaggtgatgtcgatttgctagtcgggatcgggaggcctatgtagaactcaagct 18722503  T
Q  301 ta 302  Q
    ||    
T  18722502 ta 18722501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University