View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14378_low_1 (Length: 568)
Name: NF14378_low_1
Description: NF14378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14378_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 34 - 321
Target Start/End: Complemental strand, 9916265 - 9915974
Alignment:
| Q |
34 |
aatgattacaaaatagtgaattcctacttgacnnnnnnntgaataaatatatactacaacactcaatcccaatatttaagatagttcctccaattcctct |
133 |
Q |
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| T |
9916265 |
aatgaatacaaaatagtgaattcctaattgacaaaaaaatgaataaatatatactacaaccctcaatcccaatatttaagatagttcctccaattcctct |
9916166 |
T |
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| Q |
134 |
ttaccacttgcttttttactttaaccatttttgtgattaaagcatatcatatgccctctgcaacctttttggcctattcctcaaccaccaaatga---ac |
230 |
Q |
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| T |
9916165 |
ttaccacttgcttttttactttaaccatttttgtgattaaagcatatcatatgccctctgcaacctttttggcctattcctcaaccaccaaatgaattac |
9916066 |
T |
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| Q |
231 |
ttaacctaatttgtgagtat-aaaatgggtgagatatgcgatgaaaaaacatagagagcaaaagattatgagtcaaacacatccataaccac |
321 |
Q |
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| T |
9916065 |
ttaacctaatttgtgagtataaaaatgggtgagatatgggatgaaaaaacatagagagcaaaagactatgagccaaacacatccatacccac |
9915974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 486 - 555
Target Start/End: Complemental strand, 9915633 - 9915564
Alignment:
| Q |
486 |
gaggtgaaccaaatcaacagttgttgccggttccctaaacttcattccatgatttgaaatcaatattctt |
555 |
Q |
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| T |
9915633 |
gaggtgaaccaaatcaacagttgttgccggttccctaaacttcattccatgatttgaaatcaattttctt |
9915564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 331 - 389
Target Start/End: Complemental strand, 9915793 - 9915735
Alignment:
| Q |
331 |
ttaacaaagttttctgtcaacttatggtttcaaaaggagtagggtttgttaattctata |
389 |
Q |
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| T |
9915793 |
ttaacaaagttttctgtcaacttatggtttcaaaaggagtagggtttgttaattctata |
9915735 |
T |
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