View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14378_low_11 (Length: 245)
Name: NF14378_low_11
Description: NF14378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14378_low_11 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 2685758 - 2685982
Alignment:
| Q |
16 |
caataccaagctaacaaagacatggaccatgttttacttgaattgacaaaattaaactttaacataacgcaagccaaacttcaaaaagaggtcaaagaat |
115 |
Q |
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| T |
2685758 |
caataccaagctaacaaagacatggaccatgttttacttgaattgacaaaattaaactttaacataacacaagccaaacttcaaaaagaggtcaaagaat |
2685857 |
T |
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| Q |
116 |
tgtccaggtatatacttttagctagag-nnnnnnnnngttgtttttagaagaaataatttttgttgtagcnnnnnnnnnnnnnnnnnnttttgtttaacg |
214 |
Q |
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| T |
2685858 |
tgtccaggtatatatttttagctagagaaagaaataagttgtttttagaagaaataatttttgttgtagc------aaaaaaaaaaagttttgtttaacg |
2685951 |
T |
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| Q |
215 |
tgcacaaacaaattagtattgaatcatctat |
245 |
Q |
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| T |
2685952 |
tgcacaaacaaattagtattgaatcatctat |
2685982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 121
Target Start/End: Original strand, 2680527 - 2680623
Alignment:
| Q |
26 |
ctaacaaagacatggaccatgttttacttgaattgacaaaattaaa-ctttaacataacgcaagccaaacttcaaaaagaggtcaaagaattgtcca |
121 |
Q |
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| T |
2680527 |
ctaacaaagccatggaccccattttatttgaactcacaaaactaaaacattaacataacgtaggccaaacttcaaaagggggtgaaggaattgtcca |
2680623 |
T |
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