View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14378_low_2 (Length: 556)
Name: NF14378_low_2
Description: NF14378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14378_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 1e-79; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 301 - 538
Target Start/End: Original strand, 1289793 - 1290039
Alignment:
| Q |
301 |
agtatctcataacatattaagtgctaatacatgcacttcataaccaaattttt--ttattgtggtagttgtggatattttagnnnnnnnnnnngttttgt |
398 |
Q |
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| T |
1289793 |
agtatctcataacatattaagtgctaatatatgcacttcataaccaaatttttatttattgtggtagttgtggatattttagtttttttttttttttttt |
1289892 |
T |
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| Q |
399 |
tt--------ccatttggttcaagtttgagaaggattctattaaatttgatagaatgatagggatgtaaacaaggcatgcttgtccaccagaagtccata |
490 |
Q |
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| T |
1289893 |
ttttttttttccatttggttcaagtttgagaaggattctattaaatttgatagaatgatagggatgtaaacaaggcatgc-tgtccaccagaagtccata |
1289991 |
T |
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| Q |
491 |
gttaagcaaactaaatgtttgtttagtaagacatatgattgagcttat |
538 |
Q |
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| T |
1289992 |
gttaagcaaactaaatgtttgtttagtaagacatatgattaagcttat |
1290039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 331 - 511
Target Start/End: Original strand, 1287880 - 1288058
Alignment:
| Q |
331 |
atgcacttcataaccaaatttttttattgtggtagttgtggatattttagnnnnnnnnnnngttttgtttccatttggttcaagtttgagaaggattcta |
430 |
Q |
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| T |
1287880 |
atgcacttcataactagatttatttattgtggtagttgtggatattttagtttttttttt--tttttttttcgtttggttcaagtttgagtatgaatata |
1287977 |
T |
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| Q |
431 |
ttaaatttgatagaatgatagggatgtaaacaaggcatgcttgtccaccagaagtccatagttaagcaaactaaatgtttg |
511 |
Q |
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| T |
1287978 |
ttagatttgatagaatgatatggatgtaaacaaggcatgcttgtccgccagaagtccatagttaagctaactaaatgtttg |
1288058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 1289613 - 1289682
Alignment:
| Q |
54 |
ctaaaataagaagggttcactttgccacatgtacgtacaattgcatgtgcaaacaagatttacacatttg |
123 |
Q |
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| T |
1289613 |
ctaaaataagaagggttcactttgccacatgtacgtacaattgcatgtgcaaacaagatttacacatttg |
1289682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 1291445 - 1291509
Alignment:
| Q |
54 |
ctaaaataagaagggttcactttgccacatgtacgtacaattgcatgtgcaaacaagatttacacattt |
122 |
Q |
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| T |
1291445 |
ctaaaataagaagggttcactttgccacaagtac----aatggcatgtgcaaacaagatttacacattt |
1291509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 281
Target Start/End: Original strand, 1289769 - 1289806
Alignment:
| Q |
244 |
gtacagagaatccccaattaatgaagtatctcataaca |
281 |
Q |
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| T |
1289769 |
gtacagagaatccccaattaatgaagtatctcataaca |
1289806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 1289662 - 1289704
Alignment:
| Q |
131 |
caaaaaagatttacagatttgtcattaagtggtgtgaaccaaa |
173 |
Q |
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| T |
1289662 |
caaacaagatttacacatttgtcatcaagtggtgtgaaccaaa |
1289704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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