View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14378_low_3 (Length: 447)

Name: NF14378_low_3
Description: NF14378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14378_low_3
NF14378_low_3
[»] chr1 (3 HSPs)
chr1 (7-389)||(31231084-31231466)
chr1 (389-447)||(31231498-31231555)
chr1 (394-423)||(31231556-31231585)
[»] chr4 (3 HSPs)
chr4 (35-100)||(56329216-56329281)
chr4 (35-114)||(41496070-41496149)
chr4 (12-108)||(24899343-24899440)
[»] chr7 (1 HSPs)
chr7 (10-79)||(37486065-37486137)
[»] chr6 (2 HSPs)
chr6 (22-108)||(33293560-33293648)
chr6 (36-112)||(1825897-1825973)
[»] chr5 (1 HSPs)
chr5 (21-108)||(41364665-41364753)
[»] chr3 (1 HSPs)
chr3 (12-112)||(5411433-5411537)
[»] chr2 (1 HSPs)
chr2 (15-83)||(45134692-45134761)


Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 7 - 389
Target Start/End: Original strand, 31231084 - 31231466
Alignment:
Q  7 tatattattctagcaaactaatttcttcttcattcatttgataaagattacaatcaccaatcatttatttatagcattggcattccaatgactcgtcaca 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31231084 tatactattctagcaaactaatttcttcttcattcatttgataaagattacaatcaccaatcatttatttatagcattggcattccaatgacttgtcaca 31231183  T
Q  107 aaggatattctagaaagcatgaatcattcacacattttttcgaatccaaaattgaaaactatagagatgtgataaacaatggtcaaatatgcatccaaat 206  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31231184 aaggatattctagaaagcatgactcattcacacattttttcgaatccaaaattgaaaaatatagagatgtgataaacaatggtcaaatatgcatccaaat 31231283  T
Q  207 actccatgttcacaaatcaataagtttaagcctcaaagtacacgaaaatcacaaatccaatttccattattatcatcaaaattnnnnnnnctacattcag 306  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||       |||||||||     
T  31231284 actccatgttcacaaatcaaaaagtttaagcctcaaagtacacgaaaatcacaaatccaatttccattattattatcaaaattaaaaaaactacattcaa 31231383  T
Q  307 atgaaactatgaacaaaaaactgtagtggactggcctcaccctacaaacatttatcaactaaacaaaactatacattcatacg 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31231384 atgaaactatgaacaaaaaactgtagtggactggcctcaccctacaaacatttatcaactaaacaaaactatacattcatacg 31231466  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 389 - 447
Target Start/End: Original strand, 31231498 - 31231555
Alignment:
Q  389 gatagtttcattgttcaattaatagtaaagaaataaaacaaatctaagggataaaataa 447  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  31231498 gatagtttcattgttcaattaatagtaaagaaataaaacaaatc-aagagataaaataa 31231555  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 423
Target Start/End: Original strand, 31231556 - 31231585
Alignment:
Q  394 tttcattgttcaattaatagtaaagaaata 423  Q
    ||||||||||||||||||||||||||||||    
T  31231556 tttcattgttcaattaatagtaaagaaata 31231585  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 56329281 - 56329216
Alignment:
Q  35 ttcattcatttgataaagattacaatcaccaatcatttatttatagcattggcattccaatgactc 100  Q
    |||||||||||||||| ||||| ||| ||||| || ||||||||||||||| ||||||||||||||    
T  56329281 ttcattcatttgataatgattataatgaccaaccaattatttatagcattgacattccaatgactc 56329216  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 114
Target Start/End: Complemental strand, 41496149 - 41496070
Alignment:
Q  35 ttcattcatttgataaagattacaatcaccaatcatttatttatagcattggcattccaatgactcgtcacaaaggatat 114  Q
    |||||||||||||||| ||||||||| ||||| |   |||||||||||||| ||||| |||||||| ||||||| |||||    
T  41496149 ttcattcatttgataaggattacaatgaccaacccactatttatagcattgacattctaatgactcatcacaaatgatat 41496070  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 24899440 - 24899343
Alignment:
Q  12 tattctagcaaactaatttcttc-ttcattcattt-gataaagattacaatcaccaatcatttatttatagcattggcattccaatgactcgtcacaaa 108  Q
    ||||||| ||||||| ||||||| |||||| |||| ||| | ||||||||| |||||||  |||||||||| |||| |||| |||||||||||||||||    
T  24899440 tattctaacaaacta-tttcttcattcatttattttgattatgattacaatgaccaatccattatttatagtattgacatttcaatgactcgtcacaaa 24899343  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 37486065 - 37486137
Alignment:
Q  10 attattctagcaaactaattt-cttc-ttcatt-catttgataaagattacaatcaccaatcatttatttata 79  Q
    ||||||||| ||||||||||| |||| |||||| |||||||||| ||||||||||||||||||||||||||||    
T  37486065 attattctaacaaactaattttcttcattcatttcatttgataatgattacaatcaccaatcatttatttata 37486137  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 33293648 - 33293560
Alignment:
Q  22 aactaatttcttc-ttcattcattt-gataaagattacaatcaccaatcatttatttatagcattggcattccaatgactcgtcacaaa 108  Q
    |||||| |||||| ||||||||||| ||||| ||||||||| | ||| |  |||||||||||||||||||||||||||||| |||||||    
T  33293648 aactaaattcttcattcattcatttcgataatgattacaatgatcaacccattatttatagcattggcattccaatgactcatcacaaa 33293560  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 1825973 - 1825897
Alignment:
Q  36 tcattcatttgataaagattacaatcaccaatcatttatttatagcattggcattccaatgactcgtcacaaaggat 112  Q
    |||||||||| | || ||||||||| || || |  ||||||||||||||| |||| ||||||||| |||||||||||    
T  1825973 tcattcatttcacaatgattacaatgacaaaaccattatttatagcattgacatttcaatgactcatcacaaaggat 1825897  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 41364753 - 41364665
Alignment:
Q  21 aaactaatttcttc-ttcattcatttgataaagattacaatcaccaatcatttatttatagcattggcattccaatgactcgtcacaaa 108  Q
    ||||||| |||||| ||||||||||| |||| ||||||||||| |||||| || |||||||| |||  |||| ||||| || |||||||    
T  41364753 aaactaaattcttcattcattcatttcataatgattacaatcatcaatcacttctttatagccttgatattctaatgattcatcacaaa 41364665  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 5411537 - 5411433
Alignment:
Q  12 tattctagcaaactaatttcttcttcattcatt----tgataaagattacaatcaccaatcatttatttatagcattggcattccaatgactcgtcacaa 107  Q
    ||||||| |||||||| ||||||||||||||||    |||||| | ||||||| | || |   ||||||||| |||||||||| ||||||||| ||| ||    
T  5411537 tattctaacaaactaaattcttcttcattcattcatttgataatgtttacaatgagcactacattatttatatcattggcattacaatgactcatcataa 5411438  T
Q  108 aggat 112  Q
    |||||    
T  5411437 aggat 5411433  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 45134692 - 45134761
Alignment:
Q  15 tctagcaaactaatttcttc-ttcattcatttgataaagattacaatcaccaatcatttatttatagcat 83  Q
    |||| ||||||||||| ||| |||||||||||||||  ||||||||| ||||| |  |||||||||||||    
T  45134692 tctaacaaactaatttattcattcattcatttgatattgattacaataaccaacctattatttatagcat 45134761  T

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