View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14378_low_4 (Length: 435)
Name: NF14378_low_4
Description: NF14378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14378_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 65 - 419
Target Start/End: Original strand, 51413737 - 51414082
Alignment:
| Q |
65 |
ctattaatgctgacgtgtcctgtgtatttgacccagctagtaatcatgtggatgtggcaggtgaatcatattcaaactccagtgacaaatctgtttctga |
164 |
Q |
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| T |
51413737 |
ctattaatgctgacgtgtcctgtgtgtttgacccagctagtaatcatgtggatgtggcaggtgaatcatattcaaactccagtgacaaatctgcttctga |
51413836 |
T |
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| Q |
165 |
ggctctctctttgaatctctgtactatgtatatgttatgttaatgttaatgttaatgttagttcatgtaattgtaggtaccttattattgacctgcaatt |
264 |
Q |
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| T |
51413837 |
ggctctctctttgaatctctgtactatgtatatgtt------atgttaatgttaatgttagttcatgtaattgtaggtaccttattattgacctgcaatt |
51413930 |
T |
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| Q |
265 |
gttttcttttcgtactgtagtgttgttatgct---atcaacaaagctagcttctttcactttactattactacgtttatttcaattaccttccctttcta |
361 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
51413931 |
gttttcttttcgtactgtagtgttgttatgctatcatcaacaaagctagcttctttcact------ttactacgtttatttcaattaccttccctttcta |
51414024 |
T |
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| Q |
362 |
aattcaaatggttaatcactcttttgctaacnnnnnnntaagaattaatatgttttgt |
419 |
Q |
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| T |
51414025 |
aattcaactggttaatcactcttttgctaacaaaaaaataagaattaatatgttttgt |
51414082 |
T |
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