View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14378_low_5 (Length: 414)
Name: NF14378_low_5
Description: NF14378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14378_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 34 - 398
Target Start/End: Complemental strand, 787618 - 787255
Alignment:
| Q |
34 |
ataggcacgcgtagctctctcttcatagtagctttttgaaacaacaaagagaatatacatgattgtatcttatgcacgctctacttattttttcactcac |
133 |
Q |
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| T |
787618 |
ataggcacgcgtagctctctcttcatagtagctttttgaaacaacaaagagaatatacatgattgtatcttatgcacgctctacttattttt-cactcac |
787520 |
T |
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| Q |
134 |
aaaaccaacattttatttgcacacattttccaacactaagaatttaccccaattttcggtaattgtcactcccactatatagtaatcatcctattttatc |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
787519 |
aaaaccaacattttatttgcacacattttccaacactaagaatttaccccaattttcggtaattgtcactcccactatatattaatcatcctattttatc |
787420 |
T |
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| Q |
234 |
cttttcctacttcttattttataactaatatgaataatatccattccactccatcatctgcgtgacaaattgctgcattagcatcattacatatcatcat |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
787419 |
cttttcctacttcttattttataactaatatgaataatatccattccactccatcatctgcgtgacaaattgctgcattagcatcattacatatcatcat |
787320 |
T |
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| Q |
334 |
gcataccatcaatacgtgcctgccttcatatactttcgcatgcctaagctatatggacaacttcc |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
787319 |
gcataccatcaatacgtgcctgccttcatatactttcgcatgcctaagctatatggacaacttcc |
787255 |
T |
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