View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14378_low_8 (Length: 295)

Name: NF14378_low_8
Description: NF14378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14378_low_8
NF14378_low_8
[»] chr7 (15 HSPs)
chr7 (18-164)||(6252648-6252794)
chr7 (198-295)||(21369402-21369499)
chr7 (197-295)||(16156231-16156329)
chr7 (200-295)||(22708602-22708697)
chr7 (32-108)||(33178839-33178914)
chr7 (42-108)||(686207-686273)
chr7 (18-105)||(42432030-42432115)
chr7 (32-108)||(686139-686213)
chr7 (30-108)||(37399445-37399521)
chr7 (30-108)||(42941443-42941522)
chr7 (30-83)||(31902062-31902114)
chr7 (30-83)||(34966008-34966060)
chr7 (32-108)||(42432691-42432767)
chr7 (30-83)||(42942083-42942136)
chr7 (27-83)||(47378533-47378590)
[»] chr4 (10 HSPs)
chr4 (198-295)||(11474841-11474938)
chr4 (198-295)||(34454919-34455016)
chr4 (18-108)||(35576715-35576807)
chr4 (30-108)||(32554713-32554790)
chr4 (18-108)||(35577158-35577249)
chr4 (32-108)||(45753359-45753435)
chr4 (30-108)||(36218117-36218195)
chr4 (30-83)||(41550700-41550754)
chr4 (30-83)||(34267765-34267818)
chr4 (30-83)||(50772786-50772839)
[»] chr3 (7 HSPs)
chr3 (198-295)||(13180671-13180768)
chr3 (198-295)||(13185205-13185302)
chr3 (198-291)||(33758753-33758846)
chr3 (30-108)||(38929570-38929648)
chr3 (30-108)||(23615767-23615845)
chr3 (30-108)||(38852516-38852594)
chr3 (32-108)||(13935822-13935898)
[»] chr8 (16 HSPs)
chr8 (198-295)||(18775085-18775182)
chr8 (198-295)||(18784035-18784132)
chr8 (18-108)||(32825045-32825137)
chr8 (238-295)||(17465559-17465616)
chr8 (18-108)||(14786247-14786339)
chr8 (18-106)||(35560311-35560397)
chr8 (18-108)||(14782508-14782599)
chr8 (30-83)||(765018-765071)
chr8 (56-108)||(35560755-35560807)
chr8 (18-108)||(32825484-32825574)
chr8 (30-83)||(764410-764464)
chr8 (30-95)||(22201776-22201842)
chr8 (30-95)||(22201836-22201901)
chr8 (30-83)||(36180974-36181027)
chr8 (56-105)||(36538968-36539017)
chr8 (18-108)||(40248026-40248115)
[»] chr6 (8 HSPs)
chr6 (198-295)||(21302562-21302659)
chr6 (198-295)||(12638788-12638885)
chr6 (197-288)||(9343644-9343735)
chr6 (10-108)||(35051773-35051871)
chr6 (30-108)||(28924845-28924923)
chr6 (32-81)||(35052665-35052714)
chr6 (30-83)||(31065821-31065873)
chr6 (30-98)||(32754910-32754978)
[»] scaffold0671 (1 HSPs)
scaffold0671 (197-295)||(1212-1310)
[»] chr5 (15 HSPs)
chr5 (201-295)||(22825812-22825906)
chr5 (30-108)||(31650407-31650485)
chr5 (30-107)||(43126619-43126696)
chr5 (56-107)||(6530127-6530178)
chr5 (34-108)||(29185015-29185087)
chr5 (18-106)||(6346982-6347071)
chr5 (30-83)||(28863304-28863357)
chr5 (56-108)||(6530516-6530568)
chr5 (34-108)||(10433524-10433597)
chr5 (30-108)||(42257266-42257344)
chr5 (30-108)||(43120001-43120077)
chr5 (30-95)||(1628912-1628977)
chr5 (30-83)||(35894755-35894808)
chr5 (30-83)||(42866002-42866054)
chr5 (30-105)||(6346276-6346352)
[»] chr1 (17 HSPs)
chr1 (198-295)||(37259607-37259704)
chr1 (18-108)||(14922043-14922135)
chr1 (30-108)||(40845414-40845491)
chr1 (56-108)||(45286129-45286181)
chr1 (18-119)||(32473795-32473898)
chr1 (30-108)||(14922491-14922570)
chr1 (30-117)||(35165613-35165699)
chr1 (18-105)||(45285380-45285470)
chr1 (30-108)||(6505261-6505339)
chr1 (30-108)||(37596673-37596750)
chr1 (30-95)||(37596949-37597014)
chr1 (46-105)||(32473367-32473425)
chr1 (30-83)||(26617512-26617566)
chr1 (30-95)||(52213985-52214051)
chr1 (34-106)||(30456057-30456127)
chr1 (21-108)||(5564193-5564281)
chr1 (31-83)||(6810523-6810575)
[»] scaffold0065 (1 HSPs)
scaffold0065 (198-295)||(34538-34635)
[»] scaffold0512 (1 HSPs)
scaffold0512 (198-243)||(1-46)
[»] chr2 (19 HSPs)
chr2 (10-108)||(2236055-2236152)
chr2 (58-108)||(2235658-2235708)
chr2 (30-108)||(2940060-2940139)
chr2 (30-105)||(33575423-33575497)
chr2 (30-83)||(38815491-38815544)
chr2 (30-89)||(32525232-32525292)
chr2 (30-82)||(39317589-39317641)
chr2 (30-105)||(44272927-44273002)
chr2 (28-95)||(1858514-1858581)
chr2 (30-108)||(34788824-34788902)
chr2 (30-108)||(39318189-39318267)
chr2 (27-108)||(19975326-19975407)
chr2 (30-95)||(38816015-38816080)
chr2 (30-83)||(38816074-38816127)
chr2 (26-83)||(40831362-40831419)
chr2 (30-117)||(31076112-31076199)
chr2 (30-89)||(32525852-32525912)
chr2 (27-83)||(42158927-42158983)
chr2 (57-105)||(44273465-44273513)
[»] scaffold0508 (1 HSPs)
scaffold0508 (30-95)||(362-427)
[»] scaffold0045 (1 HSPs)
scaffold0045 (31-83)||(75259-75312)
[»] scaffold0034 (1 HSPs)
scaffold0034 (198-295)||(84619-84716)


Alignment Details
Target: chr7 (Bit Score: 99; Significance: 7e-49; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 6252794 - 6252648
Alignment:
Q  18 attaaattgggaggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagccgaaagaaaa 117  Q
    |||||||||  |||||||||||| |||||||||||||| || ||||||||| ||||| ||||||||||| |||||||| ||||||||| | |||||||||    
T  6252794 attaaattgtaaggtaaaattccgaattttaaaatagaaggataaaattccgattcaatcaaaatacagagggcaaaattgtacttaaactgaaagaaaa 6252695  T
Q  118 ttatcacaaaaattttcttaaaatagttgtacaatgtcatttttctt 164  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  6252694 ttatcacaaaaattttcataaaatagttgtacaatgtcatttttctt 6252648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 198 - 295
Target Start/End: Complemental strand, 21369499 - 21369402
Alignment:
Q  198 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggaggccctaa 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||    
T  21369499 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaataacaagggcgaggaccaagaaagctaaggaggccctaa 21369402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 197 - 295
Target Start/End: Original strand, 16156231 - 16156329
Alignment:
Q  197 ttgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggaggccctaa 295  Q
    ||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16156231 ttgatgagggcacagttgtccatgacacaagcgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagagagctaaggaggccctaa 16156329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 200 - 295
Target Start/End: Complemental strand, 22708697 - 22708602
Alignment:
Q  200 atgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggaggccctaa 295  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | || |||||||||| ||||||||||||||    
T  22708697 atgagggcatagttttccatgacacaagtgattcaattcaagggctaggaggaccaatgacaagggcaaggaccaagaaagttaaggaggccctaa 22708602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 33178914 - 33178839
Alignment:
Q  32 taaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||| | ||||||||||| ||||||||||| | ||||||||||||||  |||||||||| || |||||||||    
T  33178914 taaaattccgagttttaaaataggggggtaaaatttcgattcagtcaaaata-ggggggcaaaattgcacttaagcc 33178839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 686207 - 686273
Alignment:
Q  42 aattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||||||| ||||||||||| | ||| ||||||||||  |||| |||||||| |||||||||    
T  686207 aattttaaaataggggggtaaaatttcgatttagtcaaaataggggggacaaaactgcacttaagcc 686273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 42432115 - 42432030
Alignment:
Q  18 attaaattgggaggtaaaattccaaattttaaaata-gaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaa 105  Q
    ||||||||||| ||||| ||||| |||||||||||| |||  ||||||||| |||| ||||||||||  ||||||||||||| ||||||    
T  42432115 attaaattggg-ggtaatattccgaattttaaaatatgagaagtaaaattcaaatttagtcaaaata--gggggcaaaactgcacttaa 42432030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 686213 - 686139
Alignment:
Q  32 taaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||| | ||||||||||| ||||||||||| | ||| ||||||||||  ||||||||||||| |||||||||    
T  686213 taaaattccgagttttaaaatag-ggggtaaaatttcgattgagtcaaaatag-gggggcaaaactgcacttaagcc 686139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 37399445 - 37399521
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||||| | ||||||||||| |||| ||||| | |||||| |||||||  |||||| ||||||| |||||||||    
T  37399445 ggtaaaattccgagttttaaaataggggggcaaaatccaaattcaatcaaaat--agggggtaaaactgcacttaagcc 37399521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 42941522 - 42941443
Alignment:
Q  30 ggtaaaattccaaattttaaaat-agaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||||||||||||||||| |||| ||||||||||  ||||| ||||||||  ||||| |||| || | |||||||    
T  42941522 ggtaaaattccaaattttaaaataagagaggtaaaattcagattcaatcaaaatatggggggtaaaattgcatttaagcc 42941443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 31902114 - 31902062
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaata 83  Q
    ||||||||||||||||||||||||| | ||||||||||  ||||| ||||||||    
T  31902114 ggtaaaattccaaattttaaaatag-gaggtaaaattcatattcaatcaaaata 31902062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 34966060 - 34966008
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaata 83  Q
    ||||||||||| ||||||||||||| | ||||||||||  ||||||||||||||    
T  34966060 ggtaaaattccgaattttaaaatag-gaggtaaaattctgattcagtcaaaata 34966008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 42432691 - 42432767
Alignment:
Q  32 taaaattccaaattttaaaataga-ggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||| | |||||||||||| |||||||||| || ||||||| ||||||  ||||| ||||||| |||||||||    
T  42432691 taaaattccgagttttaaaatagagggggtaaaatcccgattcagttaaaata-ggggggtaaaactgcacttaagcc 42432767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 42942083 - 42942136
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaata 83  Q
    ||||||||||| | ||||||||||| ||||||||||||  ||||| ||||||||    
T  42942083 ggtaaaattccgagttttaaaataggggggtaaaattcagattcaatcaaaata 42942136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 47378590 - 47378533
Alignment:
Q  27 ggaggtaaaattccaaattttaaaatagagggg-taaaattccaattcagtcaaaata 83  Q
    |||||||||||||| | |||||||||||||||| ||||||||  ||||| ||||||||    
T  47378590 ggaggtaaaattccgagttttaaaatagaggggataaaattcagattcaatcaaaata 47378533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 198 - 295
Target Start/End: Original strand, 11474841 - 11474938
Alignment:
Q  198 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggaggccctaa 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11474841 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggaggccctaa 11474938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 198 - 295
Target Start/End: Original strand, 34454919 - 34455016
Alignment:
Q  198 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggaggccctaa 295  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||  ||||||||||||||||||| ||||    
T  34454919 tgatgagggcataattgtccatgacacaagtgcttcaattcaagggctaggaagaccaatgacaagggcaagggccaagaaagctaaggaggcgctaa 34455016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 35576807 - 35576715
Alignment:
Q  18 attaaattg-ggaggtaaaattccaaattttaaaatagagggg-taaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||| || ||||||||||| | |||||||||||||||| ||||||||| |||| |||||||||| ||||||||||||| |||||||||    
T  35576807 attaaattgagggggtaaaattccgagttttaaaatagagggggtaaaattccgattctgtcaaaatacggggggcaaaactgcacttaagcc 35576715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 32554790 - 32554713
Alignment:
Q  30 ggtaaaattccaaattttaaaatagagg-ggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||||| | ||||||||||| || |||||||| || |||||| |||||||  |||||||||| ||||||||||||    
T  32554790 ggtaaaattccgagttttaaaataggggtggtaaaatcccgattcagccaaaata--gggggcaaaattgtacttaagcc 32554713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 35577158 - 35577249
Alignment:
Q  18 attaaattggg-aggtaaaattccaaattttaaaatag-aggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||||| |||||||||| | | | ||||||||| ||||||||||||||  ||| |||||||||  ||||||||||||| |||||||||    
T  35577158 attaaattggggaggtaaaatttcgagtattaaaataggaggggtaaaattccggttctgtcaaaatag-gggggcaaaactgcacttaagcc 35577249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 45753359 - 45753435
Alignment:
Q  32 taaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||| | ||||||||||||||||||||||||  ||||| ||||||||  ||||| |||| || | |||||||    
T  45753359 taaaattccgagttttaaaatagaggggtaaaattcagattcaatcaaaatagggggggtaaaattgcatttaagcc 45753435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 36218117 - 36218195
Alignment:
Q  30 ggtaaaattccaaattttaaaatag-aggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||| ||| ||||||||||| |||| ||||||||  ||||||||||||||  |||| |||||||| |||||||||    
T  36218117 ggtaaaatttcaagttttaaaataggagggataaaattcagattcagtcaaaata-gggggacaaaactgcacttaagcc 36218195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 41550754 - 41550700
Alignment:
Q  30 ggtaaaattccaaattttaaaata-gaggggtaaaattccaattcagtcaaaata 83  Q
    |||||||||||||||||||||||| | ||||||||||||  ||||| ||||||||    
T  41550754 ggtaaaattccaaattttaaaatagggggggtaaaattcagattcaatcaaaata 41550700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 34267818 - 34267765
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaata 83  Q
    ||||||||||| | ||||||||||| ||||||||||||  ||||| ||||||||    
T  34267818 ggtaaaattccgagttttaaaataggggggtaaaattcagattcaatcaaaata 34267765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 50772839 - 50772786
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaata 83  Q
    ||||||||||| | ||||||||||| |||| ||||||| |||||| ||||||||    
T  50772839 ggtaaaattccgagttttaaaataggggggcaaaattcaaattcaatcaaaata 50772786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 198 - 295
Target Start/End: Complemental strand, 13180768 - 13180671
Alignment:
Q  198 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggaggccctaa 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13180768 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggaggccctaa 13180671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 198 - 295
Target Start/End: Complemental strand, 13185302 - 13185205
Alignment:
Q  198 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggaggccctaa 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13185302 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggaggccctaa 13185205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 198 - 291
Target Start/End: Complemental strand, 33758846 - 33758753
Alignment:
Q  198 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggaggcc 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  33758846 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgaggaccaagaaagttaaggaggcc 33758753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 38929570 - 38929648
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||||| |||||||||||| |||||||||||||  ||||| ||||||||  ||||| |||| || | |||||||    
T  38929570 ggtaaaattccgaattttaaaataaaggggtaaaattcagattcaatcaaaataaggggggtaaaattgcatttaagcc 38929648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 23615845 - 23615767
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||||||| ||||||||||| ||||  |||| | |||||| ||||||||  ||||| |||| || |||||||||    
T  23615845 ggtaaaattccaagttttaaaataggggggcgaaatccaaattcaatcaaaatagggggggtaaaattgcacttaagcc 23615767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 38852594 - 38852516
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||||| | ||||||||||| ||||||||||||  ||||| ||||||||  ||||| |||| || | |||||||    
T  38852594 ggtaaaattccgagttttaaaataggggggtaaaattcagattcaatcaaaatagggggggtaaaattgcatttaagcc 38852516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 13935822 - 13935898
Alignment:
Q  32 taaaattccaaattttaaaatag-aggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    |||||||| |||||||||||||| ||  | ||||||| || ||| |||||||| |||||| |||||||||||||||||    
T  13935822 taaaattctaaattttaaaataggagaagcaaaattcaaaatcaatcaaaata-agggggtaaaactgtacttaagcc 13935898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 6e-46; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 198 - 295
Target Start/End: Complemental strand, 18775182 - 18775085
Alignment:
Q  198 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggaggccctaa 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18775182 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggaggacctaa 18775085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 198 - 295
Target Start/End: Complemental strand, 18784132 - 18784035
Alignment:
Q  198 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggaggccctaa 295  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18784132 tgatgagggcatggttgtccatgacacgaatgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggaggccctaa 18784035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 32825137 - 32825045
Alignment:
Q  18 attaaattgggagg-taaaattccaaattttaaaatagagggg-taaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||||| || ||||||||| | |||||||||||||||| ||||||||| |||| |||||||||| ||||||||||||| |||||||||    
T  32825137 attaaattgggggggtaaaattccgagttttaaaatagagggggtaaaattccgattctgtcaaaatacggggggcaaaactgcacttaagcc 32825045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 17465616 - 17465559
Alignment:
Q  238 caagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggaggccctaa 295  Q
    |||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  17465616 caagggatagaaggaccaatgacaaggtcgaggaccaagaaagctaaggaggccctaa 17465559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 14786247 - 14786339
Alignment:
Q  18 attaaattg-ggaggtaaaattccaaattttaaaatagagggg-taaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||| |||||||||||||| | ||||||||||| |||| ||||||||| |||||||| |||||  ||||||||||||| |||||||||    
T  14786247 attaaattgaggaggtaaaattccgagttttaaaatagggggggtaaaattccgattcagtcgaaatagggggggcaaaactgcacttaagcc 14786339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 35560397 - 35560311
Alignment:
Q  18 attaaattgggaggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaag 106  Q
    |||| |||||| ||||||||| | | ||||||||||| |||||||||||||||||| |||||||||  | ||||||||||| |||||||    
T  35560397 attatattggggggtaaaatttcgagttttaaaatag-ggggtaaaattccaattctgtcaaaata-ggagggcaaaactgcacttaag 35560311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 14782599 - 14782508
Alignment:
Q  18 attaaattgggaggtaaaattccaaattttaaaatagagggg-taaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||| | ||||||||| | | ||||||||||| |||| ||||||||| ||| ||||||||||  |||||| |||||| |||||||||    
T  14782599 attaaattgtggggtaaaatttcgagttttaaaatagggggggtaaaattccgatttagtcaaaatagggggggcgaaactgcacttaagcc 14782508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 765018 - 765071
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaata 83  Q
    ||||||||||| ||||||||||||| ||||||||||||  ||||| ||||||||    
T  765018 ggtaaaattccgaattttaaaataggggggtaaaattcagattcaatcaaaata 765071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 35560755 - 35560807
Alignment:
Q  56 ggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||||||| |||| |||||||||| | ||||||||||| |||||||||    
T  35560755 ggggtaaaattccgattctgtcaaaatacggcgggcaaaactgcacttaagcc 35560807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 32825484 - 32825574
Alignment:
Q  18 attaaattgg-gaggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    |||||||||| | ||||||||||| | |||||||||||  |||||||||||| |||  |||||||||  ||||| ||||||| |||||||||    
T  32825484 attaaattggaggggtaaaattccgagttttaaaataggagggtaaaattccgattatgtcaaaata-ggggggaaaaactgaacttaagcc 32825574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 764464 - 764410
Alignment:
Q  30 ggtaaaattccaaattttaaaatagagggg-taaaattccaattcagtcaaaata 83  Q
    ||||||||||| |||||||||||||||||| ||||||||  ||||| ||||||||    
T  764464 ggtaaaattccgaattttaaaatagaggggataaaattcagattcaatcaaaata 764410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 22201842 - 22201776
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggg-gtaaaattccaattcagtcaaaatacagggggcaaaa 95  Q
    ||||||||||| ||||||||||||| ||| |||||||||  ||||| |||||||| |||||| ||||    
T  22201842 ggtaaaattccgaattttaaaatagggggagtaaaattcagattcaatcaaaatagagggggtaaaa 22201776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 22201901 - 22201836
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaa 95  Q
    ||||||||||| | ||||||||||  |||||||||| || ||||| |||||||| |||||| ||||    
T  22201901 ggtaaaattccgagttttaaaataagggggtaaaatcccgattcaatcaaaatagagggggtaaaa 22201836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 36181027 - 36180974
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaata 83  Q
    ||||||||||| | ||||||||||| ||||||||||||  ||||| ||||||||    
T  36181027 ggtaaaattccgagttttaaaataggggggtaaaattcagattcaatcaaaata 36180974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 36538968 - 36539017
Alignment:
Q  56 ggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaa 105  Q
    |||||||||||   |||| |||||||||| ||||||||||||||||||||    
T  36538968 ggggtaaaattttgattcggtcaaaatacggggggcaaaactgtacttaa 36539017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 40248026 - 40248115
Alignment:
Q  18 attaaattgggaggtaaaattccaaattttaaaatag-aggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    |||||||||||  |||| ||||| ||||||||||| | |||| ||||||||  ||||||||||||||  || ||||||| || |||||||||    
T  40248026 attaaattggg--gtaatattccgaattttaaaattggagggataaaattcagattcagtcaaaataggggtggcaaaattgcacttaagcc 40248115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 198 - 295
Target Start/End: Complemental strand, 21302659 - 21302562
Alignment:
Q  198 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggaggccctaa 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21302659 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggttaggaggaccaatgacaaggtcgagaaccaagaaagctaaggaggccctaa 21302562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 198 - 295
Target Start/End: Original strand, 12638788 - 12638885
Alignment:
Q  198 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggaggccctaa 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  12638788 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaagggcgaggaccaagaaagctaaggaggccctaa 12638885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 197 - 288
Target Start/End: Original strand, 9343644 - 9343735
Alignment:
Q  197 ttgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggag 288  Q
    ||||||||||| |  |||||||||||| |||| ||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||    
T  9343644 ttgatgagggcgtaattgtccatgacagaagtacttcaattcaagggctaggaggaccaatgacaagggcaaggaccaagaaagctaaggag 9343735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 35051871 - 35051773
Alignment:
Q  10 cgaagaatattaaattgggagg-taaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    |||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||||||||  |||| |||||||| |||||||||    
T  35051871 cgaaaaatattaaattgggagggtaaaattccaagttttaaaataggggggtaaaattccgattcagtcaaaata-gggggacaaaactgcacttaagcc 35051773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 28924845 - 28924923
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||| ||| | |||| |||||| || |||||||||  ||||| |||||||| |||||||||||||| |||||||||    
T  28924845 ggtaaaactccgagttttgaaataggggagtaaaattcagattcaatcaaaatagagggggcaaaactgcacttaagcc 28924923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 35052665 - 35052714
Alignment:
Q  32 taaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaa 81  Q
    ||||| |||||||||||||||||  || ||||||||||||||||||||||    
T  35052665 taaaaatccaaattttaaaataggaggataaaattccaattcagtcaaaa 35052714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 31065873 - 31065821
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaata 83  Q
    |||||||||| |||||||||||||| ||| |||||||| |||||| ||||||||    
T  31065873 ggtaaaattctaaattttaaaatag-gggataaaattcaaattcaatcaaaata 31065821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 32754910 - 32754978
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattcc-aattcagtcaaaatacagggggcaaaactg 98  Q
    ||||||||||| | |||||||||||||||| |||| ||| |||||| |||||||| |||||| |||||||    
T  32754910 ggtaaaattccgagttttaaaatagagggggaaaaatccaaattcaatcaaaata-agggggtaaaactg 32754978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0671 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0671
Description:

Target: scaffold0671; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 197 - 295
Target Start/End: Original strand, 1212 - 1310
Alignment:
Q  197 ttgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggaggccctaa 295  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1212 ttgatgagagcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggaggtcctaa 1310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 201 - 295
Target Start/End: Complemental strand, 22825906 - 22825812
Alignment:
Q  201 tgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggaggccctaa 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22825906 tgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgaggaccaagaaagctaaggaggccctaa 22825812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 31650407 - 31650485
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||||| | |||| |||||| |||||||||||| ||||||||||||||| |||||||||||||| |||||||||    
T  31650407 ggtaaaattccgagttttgaaataggggggtaaaattcaaattcagtcaaaatagagggggcaaaactgcacttaagcc 31650485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 43126619 - 43126696
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagc 107  Q
    ||||||||||||| ||||||||||| |||||||||| |  ||| ||||||||||  |||||||||| || ||||||||    
T  43126619 ggtaaaattccaagttttaaaataggggggtaaaatcctgatttagtcaaaataaggggggcaaaattgcacttaagc 43126696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 6530178 - 6530127
Alignment:
Q  56 ggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagc 107  Q
    ||||||||||||| |||| ||||||||| |||||||||||||| ||||||||    
T  6530178 ggggtaaaattccgattctgtcaaaatagagggggcaaaactgcacttaagc 6530127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 29185087 - 29185015
Alignment:
Q  34 aaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||| ||||||||||| ||||||||||||| |||||||| |||||  |||||| |||||| |||||||||    
T  29185087 aaattccaagttttaaaatag-ggggtaaaattccgattcagtcgaaata-ggggggcgaaactgcacttaagcc 29185015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 6346982 - 6347071
Alignment:
Q  18 attaaattgggaggtaaaattccaaattttaaaatagagg-ggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaag 106  Q
    ||||||||||  ||||| ||||| ||||||||||||| |  |||||||| |  ||||||||||||||  ||||||||||||| |||||||    
T  6346982 attaaattggagggtaatattccgaattttaaaatagggaaggtaaaatccagattcagtcaaaatagggggggcaaaactgcacttaag 6347071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 28863357 - 28863304
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaata 83  Q
    ||||||||||| ||||||||||||| |||| ||||||| |||||| ||||||||    
T  28863357 ggtaaaattccgaattttaaaataggggggaaaaattcaaattcaatcaaaata 28863304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 6530516 - 6530568
Alignment:
Q  56 ggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||||||  |||| |||||||||| ||||||||||||| |||||||||    
T  6530516 ggggtaaaattctgattctgtcaaaatacggggggcaaaactgcacttaagcc 6530568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 108
Target Start/End: Original strand, 10433524 - 10433597
Alignment:
Q  34 aaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||||||||||||||| |||| ||||| | |||||| |||||| |  ||||| ||||||| |||||||||    
T  10433524 aaattccaaattttaaaatag-ggggcaaaatccaaattcaatcaaaacagggggggtaaaactgcacttaagcc 10433597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 42257344 - 42257266
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||||| | ||||||||||| ||||||||||||  ||||| ||||||||  ||||| |||| || | |||||||    
T  42257344 ggtaaaattccgagttttaaaataggggggtaaaattcagattcaatcaaaatagggggggtaaaattgcatttaagcc 42257266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 43120077 - 43120001
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||| ||||| ||||||||||||| |||||||||||   |||||||||||||| | |||| ||||||| |||||||||    
T  43120077 ggtaatattccgaattttaaaatag-ggggtaaaatttagattcagtcaaaata-aaggggtaaaactgcacttaagcc 43120001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 1628977 - 1628912
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaa 95  Q
    ||||||||||| | ||||||||||  |||| |||||||| ||||| |||||||| |||||| ||||    
T  1628977 ggtaaaattccgagttttaaaataagggggcaaaattccgattcaatcaaaatagagggggtaaaa 1628912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 35894755 - 35894808
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaata 83  Q
    ||||||||||| | ||||||||||| ||||||||||||  ||||| ||||||||    
T  35894755 ggtaaaattccgagttttaaaataggggggtaaaattcagattcaatcaaaata 35894808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 42866054 - 42866002
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaata 83  Q
    ||||||||||||| ||||||||||| ||||||||||||  ||||| ||||||||    
T  42866054 ggtaaaattccaagttttaaaatag-ggggtaaaattcagattcaatcaaaata 42866002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 6346352 - 6346276
Alignment:
Q  30 ggtaaaattccaaa-ttttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaa 105  Q
    |||||||||||| | ||||||||||| | | ||||||||| ||||||||||||||   ||||||||| || ||||||    
T  6346352 ggtaaaattccagagttttaaaatagggagttaaaattccgattcagtcaaaataggaggggcaaaattgcacttaa 6346276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 198 - 295
Target Start/End: Original strand, 37259607 - 37259704
Alignment:
Q  198 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggaggccctaa 295  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37259607 tgatgaaggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagttaaggaggccctaa 37259704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 14922135 - 14922043
Alignment:
Q  18 attaaattgggagg-taaaattccaaattttaaaata-gaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||||| || ||||||||||| |||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||    
T  14922135 attaaattgggggggtaaaattccaagttttaaaataagaggggtaaaattccgattcagtcaaaatacggggggcaaaactgcacttaagcc 14922043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 40845414 - 40845491
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||||| | ||||||||||| ||||||||||||| ||| | ||||||||| ||||||||||||| |||||||||    
T  40845414 ggtaaaattccgagttttaaaatag-ggggtaaaattccgatttaatcaaaatacggggggcaaaactgcacttaagcc 40845491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 45286129 - 45286181
Alignment:
Q  56 ggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||||||| ||||||||||||||| ||||||||||||| |||||||||    
T  45286129 ggggtaaaattccgattcagtcaaaatacggggggcaaaactgcacttaagcc 45286181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 32473795 - 32473898
Alignment:
Q  18 attaaattgggagg-taaaattccaaattttaaaatagagggg-taaaattccaattcagtcaaaatacagggggcaaaactgtacttaagccgaaagaa 115  Q
    ||||||||||| || ||||||||| | ||||||||||| |||| ||||||| | ||||||||||||||  ||||| ||||||| ||||||||| ||| ||    
T  32473795 attaaattgggggggtaaaattccgagttttaaaatagggggggtaaaatttcgattcagtcaaaataggggggggaaaactgcacttaagcctaaaaaa 32473894  T
Q  116 aatt 119  Q
    ||||    
T  32473895 aatt 32473898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 14922491 - 14922570
Alignment:
Q  30 ggtaaaattccaaattttaaaatagagggg-taaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||||| | ||||||||||| |||| ||||||||| |||| |||||||||  ||||| ||||||| |||||||||    
T  14922491 ggtaaaattccgagttttaaaatagggggggtaaaattccgattctgtcaaaatagggggggaaaaactgcacttaagcc 14922570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 35165699 - 35165613
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagccgaaagaaaa 117  Q
    ||||| ||||| |||||||||||||| || ||||||||  ||||||| |||||| ||| |||||||||| ||||||||| ||| ||||    
T  35165699 ggtaatattccgaattttaaaataga-ggataaaattcagattcagttaaaatagaggtggcaaaactgcacttaagcctaaaaaaaa 35165613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 45285470 - 45285380
Alignment:
Q  18 attaaattgggagg-taaaattccaaattttaaaataga--ggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaa 105  Q
    ||||||||||| || ||||||||||| |||||||||||   |||||||||||||||||| |||||||||  ||  ||||||||| ||||||    
T  45285470 attaaattgggggggtaaaattccaagttttaaaataggagggggtaaaattccaattctgtcaaaataggggaagcaaaactgcacttaa 45285380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 6505261 - 6505339
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||||| | ||||||||||| |||| ||||||| || ||| ||||||||  ||||| ||||||| |||||||||    
T  6505261 ggtaaaattccgagttttaaaataggggggcaaaattcaaaatcaatcaaaatagggggggtaaaactgcacttaagcc 6505339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 37596750 - 37596673
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||||||| ||||||||||| ||||| |||||| |||||| |||||||| |||||| |||| || | |||||||    
T  37596750 ggtaaaattccaagttttaaaatag-ggggtgaaattcaaattcaatcaaaatagagggggtaaaattgcatttaagcc 37596673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 37596949 - 37597014
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaa 95  Q
    ||||||||||| | ||||||||||  |||| |||||||| |||||||||||||| |||||| ||||    
T  37596949 ggtaaaattccgagttttaaaataagggggcaaaattccgattcagtcaaaatagagggggtaaaa 37597014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 32473425 - 32473367
Alignment:
Q  46 ttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaa 105  Q
    ||||||||| ||||||||||||| ||| ||||||||||  ||||||||||||| ||||||    
T  32473425 ttaaaatag-ggggtaaaattccgatttagtcaaaatagggggggcaaaactgcacttaa 32473367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 26617512 - 26617566
Alignment:
Q  30 ggtaaaattccaaattttaaaataga-ggggtaaaattccaattcagtcaaaata 83  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||| ||||||||    
T  26617512 ggtaaaattccgaattttaaaatagagggggtaaaattcagattcaatcaaaata 26617566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 52214051 - 52213985
Alignment:
Q  30 ggtaaaattccaaattttaaaat-agaggggtaaaattccaattcagtcaaaatacagggggcaaaa 95  Q
    ||||||||||||| ||||||||| || |||| ||||| |||||||| |||||||| |||||| ||||    
T  52214051 ggtaaaattccaagttttaaaataaggggggcaaaatcccaattcaatcaaaatagagggggtaaaa 52213985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 30456127 - 30456057
Alignment:
Q  34 aaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaag 106  Q
    ||||||| | |||||||||||||||| ||||| | |||||| |||||||  |||||| ||||||| |||||||    
T  30456127 aaattccgagttttaaaatagaggggcaaaatccaaattcaatcaaaat--agggggtaaaactgcacttaag 30456057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 5564281 - 5564193
Alignment:
Q  21 aaattgggaggtaaaattccaaattttaaaatagagggg-taaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    |||| ||| ||||||||||  | ||||||||||| |||| |||||||| |||||| |||||||| |||||| |||| || | |||||||    
T  5564281 aaataggggggtaaaattctgagttttaaaatagggggggtaaaattcaaattcaatcaaaatagagggggtaaaattgcatttaagcc 5564193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 6810575 - 6810523
Alignment:
Q  31 gtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaata 83  Q
    |||||||||| | ||||||||||| ||||||||||||  ||||| ||||||||    
T  6810575 gtaaaattccgagttttaaaataggggggtaaaattcagattcaatcaaaata 6810523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 198 - 295
Target Start/End: Complemental strand, 34635 - 34538
Alignment:
Q  198 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggaggccctaa 295  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  34635 tgatgagggcatggttgtccatgacacaagtgtttcaattcaagggctaggaggaccaatgacaaggtcgaggaccaagaaagttaaggaggccctaa 34538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 46 - 1
Alignment:
Q  198 tgatgagggcatggttgtccatgacacaagtgcttcaattcaaggg 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  46 tgatgagggcatggttgtccatgacacaagtgcttcaattcaaggg 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 2236055 - 2236152
Alignment:
Q  10 cgaagaatattaaattgggagg-taaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    |||| |||||||||||||| || ||||||||| | ||||||||||| ||||||||||| | |||| |||||||||  ||||||||||||| |||||||||    
T  2236055 cgaaaaatattaaattggggggataaaattccgagttttaaaatag-ggggtaaaatttcgattctgtcaaaatag-gggggcaaaactgcacttaagcc 2236152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 2235708 - 2235658
Alignment:
Q  58 ggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||||| ||||||||||||||| ||||||||||||| |||||||||    
T  2235708 ggtaaaattccgattcagtcaaaatacggggggcaaaactgcacttaagcc 2235658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 2940139 - 2940060
Alignment:
Q  30 ggtaaaattccaaattttaaaataga-ggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||| |||||||| |||||| |||| || | |||||||    
T  2940139 ggtaaaattccgaattttaaaatagagggggtaaaattcagattcaatcaaaatagagggggtaaaattgcatttaagcc 2940060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 33575423 - 33575497
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaa 105  Q
    ||||||||||  | |||||||||||  |||||||||||||||||| |||||||| | |||||||||||| ||||||    
T  33575423 ggtaaaattctgagttttaaaataggagggtaaaattccaattcaatcaaaataga-ggggcaaaactgcacttaa 33575497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 38815544 - 38815491
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaata 83  Q
    ||||||||||||| ||||||||||| |||| ||||||| |||||| ||||||||    
T  38815544 ggtaaaattccaagttttaaaataggggggcaaaattcaaattcaatcaaaata 38815491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 32525292 - 32525232
Alignment:
Q  30 ggtaaaattccaaattttaaaataga-ggggtaaaattccaattcagtcaaaatacagggg 89  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||||| |||||||| |||||    
T  32525292 ggtaaaattccgaattttaaaatagagggggtaaaattcagattcaatcaaaatagagggg 32525232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 39317641 - 39317589
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaat 82  Q
    ||||||||||||| ||||||||||| |||| ||||||| |||||| |||||||    
T  39317641 ggtaaaattccaagttttaaaataggggggcaaaattcaaattcaatcaaaat 39317589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 44273002 - 44272927
Alignment:
Q  30 ggtaaaattccaaattttaaaatagagg-ggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaa 105  Q
    ||||||||||| | ||||||||||  || ||||||||||  ||||||||||||||  ||||||||||||||||||||    
T  44273002 ggtaaaattccgagttttaaaataagggaggtaaaattcagattcagtcaaaatag-gggggcaaaactgtacttaa 44272927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 1858581 - 1858514
Alignment:
Q  28 gaggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaa 95  Q
    ||||||||||||| | |||||||||| ||||| ||||| | |||||| |||||||| |||||| ||||    
T  1858581 gaggtaaaattccgagttttaaaatataggggcaaaatccaaattcaatcaaaatagagggggtaaaa 1858514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 34788902 - 34788824
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||||| | ||||||||||| ||||||||||||  ||||| ||||||||  ||||| |||| || | |||||||    
T  34788902 ggtaaaattccgagttttaaaataggggggtaaaattcagattcaatcaaaatagggggggtaaaattgcatttaagcc 34788824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 39318189 - 39318267
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    ||||||||||| | ||||||||||| |||||||||| | |||||| ||||||||  ||||  |||| || |||||||||    
T  39318189 ggtaaaattccgagttttaaaataggggggtaaaatccaaattcaatcaaaataagggggataaaattgcacttaagcc 39318267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 19975326 - 19975407
Alignment:
Q  27 ggaggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagcc 108  Q
    |||||||||||||| | ||||||||||| | ||||||||||  ||||| ||||||||  ||||| |||| || | |||||||    
T  19975326 ggaggtaaaattccgagttttaaaatagggaggtaaaattcagattcaatcaaaatagggggggtaaaattgcatttaagcc 19975407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 38816015 - 38816080
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaa 95  Q
    ||||||||||| | ||||||||||  |||||||||| || ||||| |||||||| |||||| ||||    
T  38816015 ggtaaaattccgagttttaaaataagggggtaaaatcccgattcaatcaaaatagagggggtaaaa 38816080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 38816074 - 38816127
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaata 83  Q
    ||||||||||| | ||||||||||| ||||||||||||  ||||| ||||||||    
T  38816074 ggtaaaattccgagttttaaaataggggggtaaaattcagattcaatcaaaata 38816127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 40831362 - 40831419
Alignment:
Q  26 gggaggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaata 83  Q
    |||||||||||||| || ||||||||||  |||||||||||| |||| | ||||||||    
T  40831362 gggaggtaaaattctaagttttaaaataagggggtaaaattcaaatttaatcaaaata 40831419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 31076199 - 31076112
Alignment:
Q  30 ggtaaaattccaaattttaaaatag-aggggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaagccgaaagaaaa 117  Q
    ||||||||||| | ||||||||||| |||||||||||||  ||||| ||||||||  ||||| |||| || | ||||||| ||||||||    
T  31076199 ggtaaaattccgagttttaaaataggaggggtaaaattcagattcaatcaaaatagggggggtaaaattgcatttaagcc-aaagaaaa 31076112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 32525852 - 32525912
Alignment:
Q  30 ggtaaaattccaaattttaaaatagagggg-taaaattccaattcagtcaaaatacagggg 89  Q
    ||||||||||||| ||||||||||| |||| ||||||||  ||||| |||||||| |||||    
T  32525852 ggtaaaattccaagttttaaaataggggggataaaattcagattcaatcaaaatagagggg 32525912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 42158927 - 42158983
Alignment:
Q  27 ggaggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaata 83  Q
    |||||||||||||| | |||| |||||| ||||||||||||  ||||| ||||||||    
T  42158927 ggaggtaaaattccgagttttgaaataggggggtaaaattcagattcaatcaaaata 42158983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 44273465 - 44273513
Alignment:
Q  57 gggtaaaattccaattcagtcaaaatacagggggcaaaactgtacttaa 105  Q
    |||||||||||| ||||||||||||||  || |||||||||| ||||||    
T  44273465 gggtaaaattccgattcagtcaaaataggggaggcaaaactgaacttaa 44273513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 362 - 427
Alignment:
Q  30 ggtaaaattccaaattttaaaatagaggggtaaaattccaattcagtcaaaatacagggggcaaaa 95  Q
    ||||||||||| | ||||||||||  |||||||||| |||||||| |||||||| |||||| ||||    
T  362 ggtaaaattccgagttttaaaataagggggtaaaatcccaattcaatcaaaatagagggggtaaaa 427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 75312 - 75259
Alignment:
Q  31 gtaaaattccaaattttaaaata-gaggggtaaaattccaattcagtcaaaata 83  Q
    ||||||||||||||||||||||| ||||| |||||||| |||||| ||||||||    
T  75312 gtaaaattccaaattttaaaataggagggataaaattcaaattcaatcaaaata 75259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 295
Target Start/End: Complemental strand, 84716 - 84619
Alignment:
Q  198 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggaggccctaa 295  Q
    ||||||||||||  ||||||| || ||||||    ||||||||||||||||| |||||||||||||| |    ||||||||||||| |||||| ||||    
T  84716 tgatgagggcataattgtccaagatacaagtcaagcaattcaagggctaggaagaccaatgacaagggcacataccaagaaagctagggaggctctaa 84619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University