View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14379_high_12 (Length: 318)
Name: NF14379_high_12
Description: NF14379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14379_high_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 9170683 - 9170384
Alignment:
| Q |
1 |
agctttatcgtatctgcattcatctgcatcaattccaattatccatagagatgttaagagtaccaacattctcttggatgacaattacactgccaaagtt |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9170683 |
agctttatcgtatctacattcatctgcatcaattccaattatccatagagatgttaagagtaccaacattctcttggatgacaattacactgccaaagtt |
9170584 |
T |
|
| Q |
101 |
tccgacttcggagcttcaagattggttccacttgatcaaacagagatagcaacaatggtgcaaggaacacttggatacttagatcccgagtatatgcaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9170583 |
tccgacttcggagcttcaagattggttccacttgatcaaacagagatagcaacaatggtgcaaggaacacttggatacttagatcccgagtatatgcaaa |
9170484 |
T |
|
| Q |
201 |
cacatcaattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacaggtgacaaacctctttcttttaataggccagaaga |
300 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9170483 |
cacataaattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacaggtgacaaacctctttcttttaataggccagaaga |
9170384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 2 - 300
Target Start/End: Complemental strand, 9218765 - 9218467
Alignment:
| Q |
2 |
gctttatcgtatctgcattcatctgcatcaattccaattatccatagagatgttaagagtaccaacattctcttggatgacaattacactgccaaagttt |
101 |
Q |
| |
|
|||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9218765 |
gctttatcatatctacattcagctgcatcaattccaattatccatagagatgttaagagtaccaacattctcttggatgacaattacactgcaaaagttt |
9218666 |
T |
|
| Q |
102 |
ccgacttcggagcttcaagattggttccacttgatcaaacagagatagcaacaatggtgcaaggaacacttggatacttagatcccgagtatatgcaaac |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
9218665 |
ccgacttcggagcttcaagattggttccacttgatcaaaccgagatagcgacaatggtacaaggaactcttggatacttagatccagagtatatgcaaac |
9218566 |
T |
|
| Q |
202 |
acatcaattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacaggtgacaaacctctttcttttaataggccagaaga |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
9218565 |
acatcaattaaccgaaaaaagtgatgtgtatagctttggagtagttcttgcagagcttctaacaggtgccaaacctctttcttttaacaggccagaaga |
9218467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 9200250 - 9199951
Alignment:
| Q |
1 |
agctttatcgtatctgcattcatctgcatcaattccaattatccatagagatgttaagagtaccaacattctcttggatgacaattacactgccaaagtt |
100 |
Q |
| |
|
||||||||| ||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
9200250 |
agctttatcatatctacattcagctgcatcaattccaattatccacagagatgttaagagtaccaacattctcttggatgacaattacaccgcaaaagtt |
9200151 |
T |
|
| Q |
101 |
tccgacttcggagcttcaagattggttccacttgatcaaacagagatagcaacaatggtgcaaggaacacttggatacttagatcccgagtatatgcaaa |
200 |
Q |
| |
|
|| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9200150 |
tctgactttggagcttccagattggttccacttgatcaaacagagatagcaacaatggtgcaaggaacacttggatacttagatcccgagtatatgcaaa |
9200051 |
T |
|
| Q |
201 |
cacatcaattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacaggtgacaaacctctttcttttaataggccagaaga |
300 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
9200050 |
cacatcaactaaccgagaaaagtgatgtttatagctttggagtggttcttgcagagcttctaacaggtgacaaacctctttcttttaacaggcaagaaga |
9199951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 9118595 - 9118894
Alignment:
| Q |
1 |
agctttatcgtatctgcattcatctgcatcaattccaattatccatagagatgttaagagtaccaacattctcttggatgacaattacactgccaaagtt |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9118595 |
agctttatcgtatctacattcatctgcatcatttccaattatccatagagatgttaagagtaccaacattctcttggatgacaattacactgcaaaagtt |
9118694 |
T |
|
| Q |
101 |
tccgacttcggagcttcaagattggttccacttgatcaaacagagatagcaacaatggtgcaaggaacacttggatacttagatcccgagtatatgcaaa |
200 |
Q |
| |
|
||||| ||||||||||| | ||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||| || ||||| ||||||| |
|
|
| T |
9118695 |
tccgatttcggagcttccaaattggttccacttgatcaaaccgagatagcaacagtggtacaaggaacacttggatacttagacccagagtacatgcaaa |
9118794 |
T |
|
| Q |
201 |
cacatcaattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacaggtgacaaacctctttcttttaataggccagaaga |
300 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
9118795 |
cgcatcaattaaccgagaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacaggtgacaaacctcttgattttaacaggccagaaga |
9118894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 9161857 - 9161558
Alignment:
| Q |
1 |
agctttatcgtatctgcattcatctgcatcaattccaattatccatagagatgttaagagtaccaacattctcttggatgacaattacactgccaaagtt |
100 |
Q |
| |
|
||||||||||||| | ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||| |
|
|
| T |
9161857 |
agctttatcgtatttacattcatctgcatcaatacctattatccatagagatgttaagagtaccaacattctcttagatgacaattacaatgcaaaagtt |
9161758 |
T |
|
| Q |
101 |
tccgacttcggagcttcaagattggttccacttgatcaaacagagatagcaacaatggtgcaaggaacacttggatacttagatcccgagtatatgcaaa |
200 |
Q |
| |
|
|| || || |||||||| || |||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
9161757 |
tctgattttggagcttcgaggttggttccacttgatcaaaccgagatagcaacaatggtacaaggaactcttggttacttagatccggagtatatgcaaa |
9161658 |
T |
|
| Q |
201 |
cacatcaattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacaggtgacaaacctctttcttttaataggccagaaga |
300 |
Q |
| |
|
|||||||| |||| || ||||||||||||||||||||||| |||||||||||||||||||| || || |||||||||||||||||||||||||||||||| |
|
|
| T |
9161657 |
cacatcaactaacagagaaaagtgatgtttatagctttggtgtagttcttgcagagcttcttacgggagacaaacctctttcttttaataggccagaaga |
9161558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 9155945 - 9155646
Alignment:
| Q |
1 |
agctttatcgtatctgcattcatctgcatcaattccaattatccatagagatgttaagagtaccaacattctcttggatgacaattacactgccaaagtt |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || ||||||||||||||||| || |||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
9155945 |
agctttatcgtatctacattcatctgcatcaataccgattatccatagagatgtcaaaagtaccaacattctcttggatgacaattacacagcgaaagtt |
9155846 |
T |
|
| Q |
101 |
tccgacttcggagcttcaagattggttccacttgatcaaacagagatagcaacaatggtgcaaggaacacttggatacttagatcccgagtatatgcaaa |
200 |
Q |
| |
|
||||| || |||||||| || || ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||||| ||||||||||||| |
|
|
| T |
9155845 |
tccgattttggagcttcgaggttagttccacttgatcaaaccgagatagcaacaatggttcaaggaactcttggatacctagatccagagtatatgcaaa |
9155746 |
T |
|
| Q |
201 |
cacatcaattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacaggtgacaaacctctttcttttaataggccagaaga |
300 |
Q |
| |
|
| |||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||| ||||| || |||||||| |||||||||||||||||||| |
|
|
| T |
9155745 |
ctcatcaattaaccgagaaaagtgatgtctatagctttggagtagtgcttgcggagcttctgacaggagataaacctctatcttttaataggccagaaga |
9155646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 9229651 - 9229352
Alignment:
| Q |
1 |
agctttatcgtatctgcattcatctgcatcaattccaattatccatagagatgttaagagtaccaacattctcttggatgacaattacactgccaaagtt |
100 |
Q |
| |
|
||||||||| ||||| |||||||||||||| | |||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9229651 |
agctttatcatatctacattcatctgcatccttaccaattatccatagagatgtcaaaagtgccaacattctcttggatgacaattacactgcaaaagtg |
9229552 |
T |
|
| Q |
101 |
tccgacttcggagcttcaagattggttccacttgatcaaacagagatagcaacaatggtgcaaggaacacttggatacttagatcccgagtatatgcaaa |
200 |
Q |
| |
|
|| || || || |||||||||||||||||||||||||| || |||||| || |||| |||||||| ||||| || |||||||| || |||||||||| |
|
|
| T |
9229551 |
tctgattttggtgcttcaagattggttccacttgatcatactatgatagccactgtggtacaaggaactcttggctatttagatccagaatatatgcaaa |
9229452 |
T |
|
| Q |
201 |
cacatcaattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacaggtgacaaacctctttcttttaataggccagaaga |
300 |
Q |
| |
|
|||| ||| |||| || |||||||||||||||||||| || ||||| || |||||||| ||||| || || |||||| ||||||||||||| |||||||| |
|
|
| T |
9229451 |
cacaccaactaacagagaaaagtgatgtttatagcttcggggtagtactggcagagctcctaacgggggagaaacctatttcttttaatagaccagaaga |
9229352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 1843008 - 1843297
Alignment:
| Q |
11 |
tatctgcattcatctgcatcaattccaattatccatagagatgttaagagtaccaacattctcttggatgacaattacactgccaaagtttccgacttcg |
110 |
Q |
| |
|
||||| ||||||| ||| ||||| ||||| |||||||||||||| |||||| ||||||||||| ||| | |||| |||||||| || || || | |
|
|
| T |
1843008 |
tatctacattcatatgcctcaataccaataatccatagagatgtcaagagtgataacattctcttagatagaaccaacacagccaaagtatcagattttg |
1843107 |
T |
|
| Q |
111 |
gagcttcaagattggttccacttgatcaaacagagatagcaacaatggtgcaaggaacacttggatacttagatcccgagtatatgcaaacacatcaatt |
210 |
Q |
| |
|
|||||||||||||||||||| |||||||||| || ||||| ||||||||||||||||| |||| ||||||||||| ||||||||||||||| |||||| |
|
|
| T |
1843108 |
gagcttcaagattggttccaattgatcaaactgaaatagccacaatggtgcaaggaactattggctacttagatccagagtatatgcaaacaagtcaatt |
1843207 |
T |
|
| Q |
211 |
aaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacaggtgacaaacctctttcttttaataggccagaaga |
300 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||||| |||| | ||||| || || |||||| ||| |||| |||||| ||||| |
|
|
| T |
1843208 |
aactgaaaaaagtgatgtctatagctttggagtagttcttgtagagttgctaacgggggagaaacctttttgttttggtaggccggaaga |
1843297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 1868607 - 1868862
Alignment:
| Q |
1 |
agctttatcgtatctgcattcatctgcatcaattccaattatccatagagatgttaagagtaccaacattctcttggatgacaattacactgccaaagtt |
100 |
Q |
| |
|
|||||| || ||||| ||||||| ||| ||||| || || |||||||||||||| |||||| ||||||||||| ||| | |||| |||||||| |
|
|
| T |
1868607 |
agctttgtcatatctacattcatatgcctcaatacccatcatccatagagatgtcaagagtgataacattctcttagatagaaccaacaccgccaaagta |
1868706 |
T |
|
| Q |
101 |
tccgacttcggagcttcaagattggttccacttgatcaaacagagatagcaacaatggtgcaaggaacacttggatacttagatcccgagtatatgcaaa |
200 |
Q |
| |
|
|| || || |||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||| ||||||||||| ||||||||||||| |
|
|
| T |
1868707 |
tcggattttggagcttcaagattggttccacttgatcaaactgaaatagccacaatggtgcaaggaactattggctacttagatccagagtatatgcaaa |
1868806 |
T |
|
| Q |
201 |
cacatcaattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagag |
256 |
Q |
| |
|
|| ||||||||| |||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
1868807 |
caagtcaattaactgaaaaaagtgatgtctatagctttggagtagttcttgtagag |
1868862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 1857019 - 1857259
Alignment:
| Q |
11 |
tatctgcattcatctgcatcaattccaattatccatagagatgttaagagtaccaacattctcttggatgacaattacactgccaaagtttccgacttcg |
110 |
Q |
| |
|
||||| ||||||| ||| |||| || || |||||||||||||| |||||| ||||||||||| |||| | |||| |||||||| || || || | |
|
|
| T |
1857019 |
tatctacattcatatgcctcaacacccatcatccatagagatgtcaagagtgataacattctcttagatggaaccaacaccgccaaagtgtcggattttg |
1857118 |
T |
|
| Q |
111 |
gagcttcaagattggttccacttgatcaaacagagatagcaacaatggtgcaaggaacacttggatacttagatcccgagtatatgcaaacacatcaatt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||| ||||||||||| ||||||||||||||| |||||| |
|
|
| T |
1857119 |
gagcttcaagattggttccacttgatcaaactgaaatagccacaatggtgcaaggaactattggctacttagatccagagtatatgcaaacaagtcaatt |
1857218 |
T |
|
| Q |
211 |
aaccgaaaaaagtgatgtttatagctttggagtagttcttg |
251 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1857219 |
aactgaaaaaagtgatgtctatagctttggagtagttcttg |
1857259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 11 - 300
Target Start/End: Complemental strand, 1816025 - 1815736
Alignment:
| Q |
11 |
tatctgcattcatctgcatcaattccaattatccatagagatgttaagagtaccaacattctcttggatgacaattacactgccaaagtttccgacttcg |
110 |
Q |
| |
|
|||||||||||| |||| ||||| || ||||||||||||||||| |||||| | ||||||||||| |||| | |||| || ||||| || || || | |
|
|
| T |
1816025 |
tatctgcattcagctgcctcaatacccattatccatagagatgtcaagagtgctaacattctcttagatggaaccaacaccgctaaagtgtcagattttg |
1815926 |
T |
|
| Q |
111 |
gagcttcaagattggttccacttgatcaaacagagatagcaacaatggtgcaaggaacacttggatacttagatcccgagtatatgcaaacacatcaatt |
210 |
Q |
| |
|
|||| ||||| ||| |||||||||||||||| || |||| ||||||||||||||||| |||| ||||| ||||| ||||||||||||||| ||||| |
|
|
| T |
1815925 |
gagcatcaaggttgattccacttgatcaaactgaagtagccacaatggtgcaaggaactattggctacttggatccagagtatatgcaaacaagccaatt |
1815826 |
T |
|
| Q |
211 |
aaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacaggtgacaaacctctttcttttaataggccagaaga |
300 |
Q |
| |
|
||| || ||||||||||| |||||||||||||||||||||| ||||| ||||| || || |||||| ||| |||| |||||| ||||| |
|
|
| T |
1815825 |
aactgagaaaagtgatgtatatagctttggagtagttcttgtggagctgctaacgggggagaaacctttttgttttggtaggccggaaga |
1815736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 41703857 - 41703820
Alignment:
| Q |
206 |
caattaaccgaaaaaagtgatgtttatagctttggagt |
243 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
41703857 |
caattaaccgataaaagtgatgtttatagctatggagt |
41703820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 267
Target Start/End: Original strand, 40573369 - 40573430
Alignment:
| Q |
206 |
caattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacagg |
267 |
Q |
| |
|
|||||||| || || |||||||||||||| ||||||||||| || |||||||| || ||||| |
|
|
| T |
40573369 |
caattaacagagaagagtgatgtttatagatttggagtagtcctagcagagctactgacagg |
40573430 |
T |
|
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