View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14379_high_15 (Length: 291)
Name: NF14379_high_15
Description: NF14379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14379_high_15 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 6860695 - 6860755
Alignment:
| Q |
50 |
taagggcatgaattgttttgtacccaagttggtggaatactcaccctccctttgtattgcc |
110 |
Q |
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| T |
6860695 |
taaggggatgaattgttttgtacccaagttggtggaatactcaccctccctttgtattgcc |
6860755 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 291
Target Start/End: Complemental strand, 12701128 - 12701098
Alignment:
| Q |
261 |
aggactaaaactaaaacatgtaaaagaataa |
291 |
Q |
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| T |
12701128 |
aggactaaaactaaaacatgtaaaagaataa |
12701098 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 291
Target Start/End: Original strand, 39508316 - 39508345
Alignment:
| Q |
262 |
ggactaaaactaaaacatgtaaaagaataa |
291 |
Q |
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| T |
39508316 |
ggactaaaactaaaacatgtaaaagaataa |
39508345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 291
Target Start/End: Original strand, 34766885 - 34766913
Alignment:
| Q |
263 |
gactaaaactaaaacatgtaaaagaataa |
291 |
Q |
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| T |
34766885 |
gactaaaactaaaacatgtaaaagaataa |
34766913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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